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Protein

Glutamate decarboxylase

Gene

gadA

Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-1122-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:gadAImported
Ordered Locus Names:VF_1064Imported
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)Imported
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000000537 Componenti: Chromosome I

Interactioni

Protein-protein interaction databases

STRINGi312309.VF_1064.

Structurei

3D structure databases

ProteinModelPortaliQ5E5Y7.
SMRiQ5E5Y7. Positions 8-448.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiRNADRYP.
OrthoDBiEOG6TFCPW.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5E5Y7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLHSKNAVR DDLLDDIYSS ADLSLSMPKY KMPEQEHDPR HAYQVIHDEL
60 70 80 90 100
MMDGNSRQNL ATFCQTWVED EVHKLMDECI DKNMIDKDEY PQTAELESRC
110 120 130 140 150
VHMLADLWNS PDAENTLGCS TTGSSEAAML GGMALKWAWR EKMKKLGKPT
160 170 180 190 200
DKPNMICGPV QVCWHKFARY WDIELREIPM EGDRLIMTPE EVIKRCDENT
210 220 230 240 250
IGVVPTLGVT FTCQYEPVKA VHEALDKLQE ETGLDIPMHI DAASGGFLAP
260 270 280 290 300
FCDPDLEWDF RLPRVKSINA SGHKFGLSPL GVGWVIWRDA SALHEDLIFN
310 320 330 340 350
VNYLGGNMPT FALNFSRPGG QIVAQYYNFL RLGKEGYRKI HQACYDTAVY
360 370 380 390 400
LSSEIEKLGM FEIIYDGKGG IPAMSWSLKE GVDPGFNLFD LSDRIRSRGW
410 420 430 440 450
QIAAYAMPPK REDLVIMRIL VRHGFSRDQA DLLVADLKHC VEFFAKHPIS
460
HGSDELESSG FNHG
Length:464
Mass (Da):52,582
Last modified:March 15, 2005 - v1
Checksum:i51E50550E542FD6B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000020 Genomic DNA. Translation: AAW85559.1.
RefSeqiWP_011261695.1. NC_006840.2.
YP_204447.1. NC_006840.2.

Genome annotation databases

EnsemblBacteriaiAAW85559; AAW85559; VF_1064.
GeneIDi3278475.
KEGGivfi:VF_1064.
PATRICi20112728. VBIVibFis127983_1067.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000020 Genomic DNA. Translation: AAW85559.1.
RefSeqiWP_011261695.1. NC_006840.2.
YP_204447.1. NC_006840.2.

3D structure databases

ProteinModelPortaliQ5E5Y7.
SMRiQ5E5Y7. Positions 8-448.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi312309.VF_1064.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAW85559; AAW85559; VF_1064.
GeneIDi3278475.
KEGGivfi:VF_1064.
PATRICi20112728. VBIVibFis127983_1067.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiRNADRYP.
OrthoDBiEOG6TFCPW.

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-1122-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700601 / ES114Imported.

Entry informationi

Entry nameiQ5E5Y7_VIBF1
AccessioniPrimary (citable) accession number: Q5E5Y7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: July 22, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.