Q5E5L5 (Q5E5L5_VIBF1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase, PLP-dependent EMBL AAW85681.1
EC=4.4.1.8 EMBL AAW85681.1

Gene names

Name:	metC EMBL AAW85681.1
Ordered Locus Names:	VF_1186

Organism

Vibrio fischeri (strain ATCC 700601 / ES114) EMBL AAW85681.1

Taxonomic identifier

312309 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length	396 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL AAW85681.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5E5L5 [UniParc]. Last modified March 15, 2005. Version 1. Checksum: B6C425E9D903DD76	FASTA	396	44,009
	10 20 30 40 50 60 MSEKLDTKYV IAGRSKKWTK GVVNPPVQRA STVVFNTVAE KNHAMVNRAK QTLFYGRRGT 70 80 90 100 110 120 ETHFALQDAM VELEGGAGCA LYPCGTAAIA NTILAFVKTG DHILMVDGCY EPTRDYCETV 130 140 150 160 170 180 LKRMGIETTY YDPMIGEGIR ELIRPNTTVL FTESPCSITM EVQDLPTLSR IAHETDITVI 190 200 210 220 230 240 LDNTWGAGVN LAPFEHGVDI SVQAATKYIV GHSDVMLGTA VANEKHWDQL REQSYLMGQC 250 260 270 280 290 300 ISPDDAYLAM RGIRTMGVRL KQHEKSSIKV AKWLEAHPLV DHVRHPALAS CPGHEFYQRD 310 320 330 340 350 360 FKGCNGLFSF VLKQSDTKAT TALLDGMTHF SMGYSWGGFE SLILANEPRS FNALRTIANP 370 380 390 NFKGTLIRVH IGLEDVEDLI HDLEEGLHRY QDALNA

References

[1]

"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners." Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed: 15703294] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000020 Genomic DNA. Translation: AAW85681.1.
RefSeq	YP_204569.1. NC_006840.2.
3D structure databases
ProteinModelPortal	Q5E5L5.
SMR	Q5E5L5. Positions 4-389.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5E5L5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3278600.
GenomeReviews	Gene locus VF_1186 in contig CP000020_GR.
KEGG	vfi:VF_1186.
NMPDR	fig|312309.3.peg.1034.
PATRIC	20112980. VBIVibFis127983_1193.
Phylogenomic databases
eggNOG	COG0626.
HOGENOM	HBG754729.
OMA	REQSYLM.
PhylomeDB	Q5E5L5.
ProtClustDB	PRK09028.
Enzyme and pathway databases
BioCyc	VFIS312309:VF1186-MONOMER.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5E5L5_VIBF1

Accession

Primary (citable) accession number: Q5E5L5

Entry history

Integrated into UniProtKB/TrEMBL:	March 15, 2005
Last sequence update:	March 15, 2005
Last modified:	January 25, 2012
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)