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Q5E330

- TRUD_VIBF1

UniProt

Q5E330 - TRUD_VIBF1

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Protein
tRNA pseudouridine synthase D
Gene
truD, VF_2071
Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs By similarity.UniRule annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei81 – 811Nucleophile By similarity

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. pseudouridine synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Biological processi

tRNA processing

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-2183-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase D (EC:5.4.99.27)
Alternative name(s):
tRNA pseudouridine(13) synthase
tRNA pseudouridylate synthase D
tRNA-uridine isomerase D
Gene namesi
Name:truD
Ordered Locus Names:VF_2071
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000000537: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 351351tRNA pseudouridine synthase DUniRule annotation
PRO_0000152526Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi312309.VF_2071.

Structurei

3D structure databases

ProteinModelPortaliQ5E330.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini158 – 304147TRUD
Add
BLAST

Sequence similaritiesi

Contains 1 TRUD domain.

Phylogenomic databases

eggNOGiCOG0585.
HOGENOMiHOG000224848.
KOiK06176.
OMAiALTRQWF.
OrthoDBiEOG6FRCSP.

Family and domain databases

HAMAPiMF_01082. TruD.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR001656. PsdUridine_synth_TruD.
IPR020119. PsdUridine_synth_TruD_CS.
IPR011760. PsdUridine_synth_TruD_insert.
[Graphical view]
PANTHERiPTHR13326. PTHR13326. 1 hit.
PfamiPF01142. TruD. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
PROSITEiPS50984. TRUD. 1 hit.
PS01268. UPF0024. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5E330-1 [UniParc]FASTAAdd to Basket

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MSDIMSNFSW LYGKPVATGK LKQLPEHFIV KEILGFEFTG NGEHLMVKIR    50
KTGENTKYVA NELAKFCGVK SKNVSWAGLK DRHAVTEQWL SVQVANSDEL 100
NFAKFEATHP GVEILEVTRH NKKLRPGDLQ GNQFQVIATE VTDIDDVLAR 150
LEKVKLAGVP NYFGSQRFGH EGNNVNEARR WGRDNVRTRD NSKRSFYLSA 200
ARSWIFNHIV SQRITEGYFS QPVDGDILLD RNDRIVNENV TSEESIQKIQ 250
NGELSITAAL AGDNQLPTTG TALTLEQPHL DAEPDLMALI RGNRMRHERR 300
AIELHPENLT WSAEGDTLTL NFSLTSGSFA TVIVRELLQE IEVERTYSSN 350
D 351
Length:351
Mass (Da):39,609
Last modified:March 15, 2005 - v1
Checksum:iA84C37A4A2C98745
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000020 Genomic DNA. Translation: AAW86566.1.
RefSeqiYP_205454.1. NC_006840.2.

Genome annotation databases

EnsemblBacteriaiAAW86566; AAW86566; VF_2071.
GeneIDi3279153.
KEGGivfi:VF_2071.
PATRICi20114866. VBIVibFis127983_2114.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000020 Genomic DNA. Translation: AAW86566.1 .
RefSeqi YP_205454.1. NC_006840.2.

3D structure databases

ProteinModelPortali Q5E330.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 312309.VF_2071.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAW86566 ; AAW86566 ; VF_2071 .
GeneIDi 3279153.
KEGGi vfi:VF_2071.
PATRICi 20114866. VBIVibFis127983_2114.

Phylogenomic databases

eggNOGi COG0585.
HOGENOMi HOG000224848.
KOi K06176.
OMAi ALTRQWF.
OrthoDBi EOG6FRCSP.

Enzyme and pathway databases

BioCyci AFIS312309:GIWP-2183-MONOMER.

Family and domain databases

HAMAPi MF_01082. TruD.
InterProi IPR020103. PsdUridine_synth_cat_dom.
IPR001656. PsdUridine_synth_TruD.
IPR020119. PsdUridine_synth_TruD_CS.
IPR011760. PsdUridine_synth_TruD_insert.
[Graphical view ]
PANTHERi PTHR13326. PTHR13326. 1 hit.
Pfami PF01142. TruD. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
PROSITEi PS50984. TRUD. 1 hit.
PS01268. UPF0024. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700601 / ES114.

Entry informationi

Entry nameiTRUD_VIBF1
AccessioniPrimary (citable) accession number: Q5E330
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: March 15, 2005
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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