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Q5E228

- Q5E228_VIBF1

UniProt

Q5E228 - Q5E228_VIBF1

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Protein
Elongation factor Tu
Gene
tufA, tuf, tufB, VF_0233, VF_2423
Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi19 – 268GTP By similarityUniRule annotation
Nucleotide bindingi81 – 855GTP By similarityUniRule annotation
Nucleotide bindingi136 – 1394GTP By similarityUniRule annotation

GO - Molecular functioni

  1. GTP binding Source: UniProtKB-HAMAP
  2. GTPase activity Source: InterPro
  3. translation elongation factor activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotationImported

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-232-MONOMER.
AFIS312309:GIWP-2547-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Short name:
EF-TuUniRule annotation
Gene namesi
Name:tufAImported
Synonyms:tufUniRule annotation, tufBImported
Ordered Locus Names:VF_0233Imported, VF_2423Imported
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)Imported
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000000537: Chromosome I

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi312309.VF_2423.

Structurei

3D structure databases

ProteinModelPortaliQ5E228.
SMRiQ5E228. Positions 4-394.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
KOiK02358.
OMAiGTEMCMP.
OrthoDBiEOG6R5C6X.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5E228-1 [UniParc]FASTAAdd to Basket

« Hide

MSKEKFERTK PHVNVGTIGH VDHGKTTLTA AICTTLAKIY GGVAKDFASI    50
DNAPEERERG ITISTSHVEY DTPARHYAHV DCPGHADYVK NMITGAAQMD 100
GGILVVAATD GPMPQTREHI LLGRQVGIPY IIVFMNKCDM VDDEELLELV 150
EMEVRELLSE YDFPGDDLPV IQGSALGALN GEKEWEDKIV ELAEALDSYI 200
PEPERAVDQP FLLPIEDVFS IQGRGTVVTG RIERGILRVG DEVEIVGIKE 250
TTMTTCTGVE MFRKLLDEGR AGENVGALLR GTKRDDVERG QVLAAKGSIN 300
PHTKFESEVY VLSKDEGGRH TPFFKGYRPQ FYFRTTDVTG DITLPEGVEM 350
VMPGDNVQMT VELIAPIAMD EGLRFAIREG GRTVGAGVVA KIFA 394
Length:394
Mass (Da):43,208
Last modified:March 15, 2005 - v1
Checksum:i93EE8BE57C7775D7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000020 Genomic DNA. Translation: AAW84728.1.
CP000020 Genomic DNA. Translation: AAW86918.1.
RefSeqiYP_203616.1. NC_006840.2.
YP_205806.1. NC_006840.2.

Genome annotation databases

EnsemblBacteriaiAAW84728; AAW84728; VF_0233.
AAW86918; AAW86918; VF_2423.
GeneIDi3277843.
3279753.
KEGGivfi:VF_0233.
vfi:VF_2423.
PATRICi20110946. VBIVibFis127983_0230.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000020 Genomic DNA. Translation: AAW84728.1 .
CP000020 Genomic DNA. Translation: AAW86918.1 .
RefSeqi YP_203616.1. NC_006840.2.
YP_205806.1. NC_006840.2.

3D structure databases

ProteinModelPortali Q5E228.
SMRi Q5E228. Positions 4-394.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 312309.VF_2423.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAW84728 ; AAW84728 ; VF_0233 .
AAW86918 ; AAW86918 ; VF_2423 .
GeneIDi 3277843.
3279753.
KEGGi vfi:VF_0233.
vfi:VF_2423.
PATRICi 20110946. VBIVibFis127983_0230.

Phylogenomic databases

eggNOGi COG0050.
HOGENOMi HOG000229290.
KOi K02358.
OMAi GTEMCMP.
OrthoDBi EOG6R5C6X.

Enzyme and pathway databases

BioCyci AFIS312309:GIWP-232-MONOMER.
AFIS312309:GIWP-2547-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00118_B. EF_Tu_B.
InterProi IPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view ]
Pfami PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view ]
PRINTSi PR00315. ELONGATNFCT.
SUPFAMi SSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEi PS00301. EFACTOR_GTP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700601 / ES114 and ES114Imported.
  2. "Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions."
    Mandel M.J., Stabb E.V., Ruby E.G.
    BMC Genomics 9:138-138(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ES114Imported.

Entry informationi

Entry nameiQ5E228_VIBF1
AccessioniPrimary (citable) accession number: Q5E228
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: September 3, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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