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Protein
Submitted name:

Transcriptional repressor

Gene

lsrR

Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

TransferaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional repressorImported (EC:2.7.1.69Imported)
Gene namesi
Name:lsrRImported
Ordered Locus Names:VF_A0400Imported
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)Imported
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
Proteomesi
  • UP000000537 Componenti: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi312309.VF_A0400.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3KV1X-ray1.70A63-326[»]
ProteinModelPortaliQ5E0H6.
SMRiQ5E0H6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5E0H6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 320Sugar-bindInterPro annotationAdd BLAST253

Phylogenomic databases

eggNOGiENOG4105DKT. Bacteria.
COG2390. LUCA.
HOGENOMiHOG000243107.
OMAiCGIGGIH.
OrthoDBiPOG091H028T.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR007324. Sugar-bd_dom_put.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04198. Sugar-bind. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5E0H6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTMSPSQDQT ENTDMLTEIA ILYYQEGATQ EEISKKFGLS RAKVGRMLRK
60 70 80 90 100
AREEGIVEIT VKFHPVYSVQ LEQKLVEKFN LKRALISLDQ PNTNEQRKQV
110 120 130 140 150
AALVSSYLNN NLQEGMAVAV GQGQNVAAVA DHAGIVTQRN ARFVSAIGGT
160 170 180 190 200
HRSGDIINAD HICRRLAKKY GGSSETLYAP AYVNDPSLRS AFMEHATIKE
210 220 230 240 250
TLSQARKAEF ALVGIGDMDE NSHMVKLGFF TPKEFVEARL NDGIVGDIGG
260 270 280 290 300
FDFFKLDGTD ADTLMRGRVI GLEMEDLRQI PNVVAMASES RKALSIMGAL
310 320
RTGVIDVLAT SVSCAMALLN LAENEE
Length:326
Mass (Da):35,720
Last modified:March 15, 2005 - v1
Checksum:i43EA2369CF12644C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000021 Genomic DNA. Translation: AAW87470.1.
RefSeqiWP_005422467.1. NC_006841.2.
YP_206358.1. NC_006841.2.

Genome annotation databases

EnsemblBacteriaiAAW87470; AAW87470; VF_A0400.
GeneIDi3280241.
KEGGivfi:VF_A0400.
PATRICi20116780. VBIVibFis127983_3003.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000021 Genomic DNA. Translation: AAW87470.1.
RefSeqiWP_005422467.1. NC_006841.2.
YP_206358.1. NC_006841.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3KV1X-ray1.70A63-326[»]
ProteinModelPortaliQ5E0H6.
SMRiQ5E0H6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi312309.VF_A0400.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAW87470; AAW87470; VF_A0400.
GeneIDi3280241.
KEGGivfi:VF_A0400.
PATRICi20116780. VBIVibFis127983_3003.

Phylogenomic databases

eggNOGiENOG4105DKT. Bacteria.
COG2390. LUCA.
HOGENOMiHOG000243107.
OMAiCGIGGIH.
OrthoDBiPOG091H028T.

Miscellaneous databases

EvolutionaryTraceiQ5E0H6.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR007324. Sugar-bd_dom_put.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04198. Sugar-bind. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5E0H6_VIBF1
AccessioniPrimary (citable) accession number: Q5E0H6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.