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Q5E0H4 (DEOD2_VIBF1) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Purine nucleoside phosphorylase DeoD-type 2

Short name=PNP 2
EC=2.4.2.1
Gene names
Name:deoD2
Ordered Locus Names:VF_A0402
OrganismVibrio fischeri (strain ATCC 700601 / ES114) [Reference proteome] [HAMAP]
Taxonomic identifier312309 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length236 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_01627

Subunit structure

Homohexamer By similarity. HAMAP-Rule MF_01627

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Ontologies

Keywords
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processpurine nucleoside metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionpurine-nucleoside phosphorylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 236236Purine nucleoside phosphorylase DeoD-type 2 HAMAP-Rule MF_01627
PRO_0000063172

Sequences

Sequence LengthMass (Da)Tools
Q5E0H4 [UniParc].

Last modified March 15, 2005. Version 1.
Checksum: F0274918A6D90B2A

FASTA23625,511
        10         20         30         40         50         60 
MATPHINAQA GDFAETVLMP GDPLRAKFIA ENFLEDVKQV CDVRNMFGYT GTYKGKKVSV 

        70         80         90        100        110        120 
MGHGMGIPSC CIYVHELIAE YGVKNVIRVG SCGAVHDDVK LMDVVIGMGA STDSKVNRIR 

       130        140        150        160        170        180 
FNNHDFAAIA DFGLLETAVG QARELNVPVK VGNVFSADLF YSPEADLFDK MEKLGILGVD 

       190        200        210        220        230 
MEAAGIYGVA ADLGAKALTI LTVSDHIKRG EKLSSEDRQK SFNDMMTVAL ETAIKL 

« Hide

References

[1]"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners."
Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P.
Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000021 Genomic DNA. Translation: AAW87472.1.
RefSeqYP_206360.1. NC_006841.2.

3D structure databases

ProteinModelPortalQ5E0H4.
SMRQ5E0H4. Positions 2-234.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING312309.VF_A0402.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAW87472; AAW87472; VF_A0402.
GeneID3280648.
KEGGvfi:VF_A0402.
PATRIC20116784. VBIVibFis127983_3005.

Phylogenomic databases

eggNOGCOG0813.
HOGENOMHOG000274896.
KOK03784.
OMASGHDFAA.
OrthoDBEOG6BKJC5.
ProtClustDBPRK13374.

Enzyme and pathway databases

BioCycAFIS312309:GIWP-3144-MONOMER.

Family and domain databases

Gene3D3.40.50.1580. 1 hit.
HAMAPMF_01627. Pur_nucleosid_phosp.
InterProIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERPTHR21234. PTHR21234. 1 hit.
PfamPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMSSF53167. SSF53167. 1 hit.
TIGRFAMsTIGR00107. deoD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOD2_VIBF1
AccessionPrimary (citable) accession number: Q5E0H4
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: March 15, 2005
Last modified: April 16, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families