Q5DZM6 (Q5DZM6_VIBF1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Aminomethyltransferase RuleBase RU003981
EC=2.1.2.10 RuleBase RU003981

Gene names

Name:	gcvT EMBL AAW87770.1
Ordered Locus Names:	VF_A0700

Organism

Vibrio fischeri (strain ATCC 700601 / ES114)

Taxonomic identifier

312309 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length	372 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The glycine cleavage system catalyzes the degradation of glycine By similarity. RuleBase RU003981
Catalytic activity	[Protein]-S(8)-aminomethyldihydrolipoyllysine + tetrahydrofolate = [protein]-dihydrolipoyllysine + 5,10-methylenetetrahydrofolate + NH3. SAAS SAAS006223 RuleBase RU003981
Subunit structure	The glycine cleavage system is composed of four proteins: P, T, L and H By similarity. RuleBase RU003981
Sequence similarities	Belongs to the GcvT family. RuleBase RU003980

Ontologies

Keywords
Molecular function	Aminotransferase SAAS SAAS006223 RuleBase RU003981 Methyltransferase EMBL AAW87770.1 Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	glycine catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	aminomethyltransferase activity Inferred from electronic annotation. Source: EC transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5DZM6 [UniParc]. Last modified March 15, 2005. Version 1. Checksum: 6BE2623DE420FB1A	FASTA	372	40,445
	10 20 30 40 50 60 MSEQLHKTAL YEIHVAAGAK MVPFAGYEMP VQYPLGVKKE HLHTRNAAGL FDVSHMGQLR 70 80 90 100 110 120 LKGKNAAAAL EALVPVDIID LPSQKQRYAF FTNDNGGIMD DLMVANFGDH LFVVVNAACK 130 140 150 160 170 180 EQDIAHLVAN LPSDVEIEVI EDRALLALQG PQAADVLSRL QPSVSNMLFM DTAVVEISGI 190 200 210 220 230 240 ECYVSRSGYT GEDGYEISVP NDKAAELAET LTSFEEVEWI GLGARDSLRL ECGLCLYGHD 250 260 270 280 290 300 LDTTTTPVEA SLLWAISKNR RADGERVAGF PGADVILKQI ETKDVNRKRV GLVGQTKAPV 310 320 330 340 350 360 REGCKLYDAD DNEIGIVTSG TAGPTAGKPV SMAYVRTDLA SLGTEVFADV RGKKLPMTVE 370 KMPFVPQRYY RG

References

[1]

"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners." Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed: 15703294] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000021 Genomic DNA. Translation: AAW87770.1.
RefSeq	YP_206658.1. NC_006841.2.
3D structure databases
ProteinModelPortal	Q5DZM6.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5DZM6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3280817.
GenomeReviews	Gene locus VF_A0700 in contig CP000021_GR.
KEGG	vfi:VF_A0700.
NMPDR	fig|312309.3.peg.3538.
PATRIC	20117395. VBIVibFis127983_3302.
Phylogenomic databases
eggNOG	COG0404.
HOGENOM	HBG299834.
OMA	MPVQYPL.
PhylomeDB	Q5DZM6.
ProtClustDB	CLSK910129.
Enzyme and pathway databases
BioCyc	VFIS312309:VFA0700-MONOMER.
Family and domain databases
InterPro	IPR013977. GCV_T_C. IPR006222. GCV_T_N. IPR006223. GcvT. [Graphical view]
KO	K00605.
PANTHER	PTHR13847:SF5. PTHR13847:SF5. 1 hit.
Pfam	PF01571. GCV_T. 1 hit. PF08669. GCV_T_C. 1 hit. [Graphical view]
PIRSF	PIRSF006487. GcvT. 1 hit.
TIGRFAMs	TIGR00528. GcvT. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5DZM6_VIBF1

Accession

Primary (citable) accession number: Q5DZM6

Entry history

Integrated into UniProtKB/TrEMBL:	March 15, 2005
Last sequence update:	March 15, 2005
Last modified:	December 14, 2011
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)