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Q5DZC1 (GLGA_VIBF1) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycogen synthase

EC=2.4.1.21
Alternative name(s):
Starch [bacterial glycogen] synthase
Gene names
Name:glgA
Ordered Locus Names:VF_A0805
OrganismVibrio fischeri (strain ATCC 700601 / ES114) [Reference proteome] [HAMAP]
Taxonomic identifier312309 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length487 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes alpha-1,4-glucan chains using ADP-glucose By similarity. HAMAP-Rule MF_00484

Catalytic activity

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1). HAMAP-Rule MF_00484

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00484

Sequence similarities

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.

Sequence caution

The sequence AAW87875.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Biological processGlycogen biosynthesis
   Molecular functionGlycosyltransferase
Transferase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processglycogen biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionstarch synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 487487Glycogen synthase HAMAP-Rule MF_00484
PRO_0000230271

Sites

Binding site201ADP-glucose By similarity

Sequences

Sequence LengthMass (Da)Tools
Q5DZC1 [UniParc].

Last modified April 4, 2006. Version 2.
Checksum: D0B33A80244A2F4C

FASTA48754,916
        10         20         30         40         50         60 
MVTKTLSIVF VASEVDGLIK SGGLADVAKA LPKSLKELGH SVQIVMPAYK TIAGRDDAEI 

        70         80         90        100        110        120 
ILTTQLEHWP HTAYQVRSLN VDGIPVFAIE SGDYFERAEM YAENNQAYAD NGERFAFFSA 

       130        140        150        160        170        180 
ATLDLLPKLL NKKPDIIHVN DWHTGLIPYL LKKRYVENEF YHQTRSVLSI HNAVFKGIFH 

       190        200        210        220        230        240 
YDEIACLSEF KSHFVPEASI SHTHVSMLKA GVQCADKINA VSPNYAKELL TELGSHGMAS 

       250        260        270        280        290        300 
DFQDRESDLI GILNGCDYSE WNPEKDSYIP KQFKVNRISM VRGKKACKAA LQQELSLPQK 

       310        320        330        340        350        360 
DVAMYGMVCR LTNQKGIQYL LPILEQFLKN DLQLVIVGTG DPVLATRLTE IAQEHSDKFA 

       370        380        390        400        410        420 
FVEAYDNKLA HWVEAGSDFF IMPSEFEPCG LNQIYSMAYG TLPIVREVGG LKDSVNNYDD 

       430        440        450        460        470        480 
DIENATGFSF KNPEPMELLL VLMRSLLLYS QNLNEVKRVQ LHAMKQDFCW NKAALKYIEM 


YRTAINS 

« Hide

References

[1]"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners."
Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P.
Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000021 Genomic DNA. Translation: AAW87875.1. Different initiation.
RefSeqYP_206763.1. NC_006841.2.

3D structure databases

ProteinModelPortalQ5DZC1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING312309.VF_A0805.

Protein family/group databases

CAZyGT5. Glycosyltransferase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAW87875; AAW87875; VF_A0805.
GeneID3280424.
KEGGvfi:VF_A0805.
PATRIC20117607. VBIVibFis127983_3407.

Phylogenomic databases

eggNOGCOG0297.
HOGENOMHOG000294940.
KOK00703.
OMALLKTMYA.
OrthoDBEOG6JTC6Z.

Enzyme and pathway databases

BioCycAFIS312309:GIWP-3560-MONOMER.
UniPathwayUPA00164.

Family and domain databases

HAMAPMF_00484. Glycogen_synth.
InterProIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR02095. glgA. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGA_VIBF1
AccessionPrimary (citable) accession number: Q5DZC1
Entry history
Integrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: April 4, 2006
Last modified: May 14, 2014
This is version 60 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways