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Q5DZB8

- GLGB_VIBF1

UniProt

Q5DZB8 - GLGB_VIBF1

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene
glgB, VF_A0808
Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei396 – 3961Nucleophile By similarity
Active sitei449 – 4491Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-3563-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:VF_A0808
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000000537: Chromosome II

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7157151,4-alpha-glucan branching enzyme GlgBUniRule annotationPRO_0000188760Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi312309.VF_A0808.

Structurei

3D structure databases

ProteinModelPortaliQ5DZB8.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiGELSHAW.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5DZB8-1 [UniParc]FASTAAdd to Basket

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MQLERAAFSD PFSFLGPQYQ SQTTALRVWL PGATSVKVRL SGHVEYQLLS    50
DPRHSGIFVL NESIDMTEVH YELIIDWSGT EQILDDPYQY HDISPTDAQV 100
HTPKEMYNHL GAHLFNVVRD GKQIQGVRYL VFAPNASSAS VIGDFNQWDG 150
RRHIMQRIDN GLWALFIPEH AVGTKYKFEL KGPNGESLPH KMDPYGAHNE 200
QYPSFASVVY DQTSYQWNDA KWQQRPVTEK QKEALSFYEL HAGSWKRNEN 250
GDFLTYRELA EQLIPYILDM GYTHIELMPV SEHPFYGSWG YQPIGLFSPT 300
SRFGTPDDFK YFVDQCHQVG IGVVLDWVPA HFPSDSHGLA NFDGTSLFND 350
PDPRRGWHND WQSFIYNYDQ PHVREFLVSN ALYWFEHFHI DGLRVDAVAS 400
MLYLDYSRND GEWIPNWEGG NHNHGAIALL KWMNEEVYSH YPNAMTIAEE 450
STAFPGVSAP TFAGGLGFGF KWNMGWMHDS LNYIREDPIH RKYHHDTITF 500
PLVYAFSENF ILSLSHDEVV YGKGSILDKM PGDEWQKTAN LRAYMGYMYG 550
QPGKKLNFMG AEIAQSAEWD HDGQLQWFLT QFERHSGMQS LVRDLNKLYT 600
TEPALYQKDC EPAGFEWRLQ DEAEMSVLAH ERLGDNGERI LVVSNFTPAP 650
REDFRLGMPV AGQYELILNS DAHFYGGSDY SVISEASTEK VESQGLAQSI 700
VITLPPLSTV FYRLK 715
Length:715
Mass (Da):82,044
Last modified:March 15, 2005 - v1
Checksum:i04B8B9225EE6798B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000021 Genomic DNA. Translation: AAW87878.1.
RefSeqiYP_206766.1. NC_006841.2.

Genome annotation databases

EnsemblBacteriaiAAW87878; AAW87878; VF_A0808.
GeneIDi3280626.
KEGGivfi:VF_A0808.
PATRICi20117613. VBIVibFis127983_3410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000021 Genomic DNA. Translation: AAW87878.1 .
RefSeqi YP_206766.1. NC_006841.2.

3D structure databases

ProteinModelPortali Q5DZB8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 312309.VF_A0808.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAW87878 ; AAW87878 ; VF_A0808 .
GeneIDi 3280626.
KEGGi vfi:VF_A0808.
PATRICi 20117613. VBIVibFis127983_3410.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi GELSHAW.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci AFIS312309:GIWP-3563-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700601 / ES114.

Entry informationi

Entry nameiGLGB_VIBF1
AccessioniPrimary (citable) accession number: Q5DZB8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: March 15, 2005
Last modified: June 11, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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