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Q5DZB8

- GLGB_VIBF1

UniProt

Q5DZB8 - GLGB_VIBF1

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei396 – 3961NucleophileUniRule annotation
Active sitei449 – 4491Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-3563-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:VF_A0808
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000000537: Chromosome II

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7157151,4-alpha-glucan branching enzyme GlgBPRO_0000188760Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi312309.VF_A0808.

Structurei

3D structure databases

ProteinModelPortaliQ5DZB8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiGELSHAW.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5DZB8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQLERAAFSD PFSFLGPQYQ SQTTALRVWL PGATSVKVRL SGHVEYQLLS
60 70 80 90 100
DPRHSGIFVL NESIDMTEVH YELIIDWSGT EQILDDPYQY HDISPTDAQV
110 120 130 140 150
HTPKEMYNHL GAHLFNVVRD GKQIQGVRYL VFAPNASSAS VIGDFNQWDG
160 170 180 190 200
RRHIMQRIDN GLWALFIPEH AVGTKYKFEL KGPNGESLPH KMDPYGAHNE
210 220 230 240 250
QYPSFASVVY DQTSYQWNDA KWQQRPVTEK QKEALSFYEL HAGSWKRNEN
260 270 280 290 300
GDFLTYRELA EQLIPYILDM GYTHIELMPV SEHPFYGSWG YQPIGLFSPT
310 320 330 340 350
SRFGTPDDFK YFVDQCHQVG IGVVLDWVPA HFPSDSHGLA NFDGTSLFND
360 370 380 390 400
PDPRRGWHND WQSFIYNYDQ PHVREFLVSN ALYWFEHFHI DGLRVDAVAS
410 420 430 440 450
MLYLDYSRND GEWIPNWEGG NHNHGAIALL KWMNEEVYSH YPNAMTIAEE
460 470 480 490 500
STAFPGVSAP TFAGGLGFGF KWNMGWMHDS LNYIREDPIH RKYHHDTITF
510 520 530 540 550
PLVYAFSENF ILSLSHDEVV YGKGSILDKM PGDEWQKTAN LRAYMGYMYG
560 570 580 590 600
QPGKKLNFMG AEIAQSAEWD HDGQLQWFLT QFERHSGMQS LVRDLNKLYT
610 620 630 640 650
TEPALYQKDC EPAGFEWRLQ DEAEMSVLAH ERLGDNGERI LVVSNFTPAP
660 670 680 690 700
REDFRLGMPV AGQYELILNS DAHFYGGSDY SVISEASTEK VESQGLAQSI
710
VITLPPLSTV FYRLK
Length:715
Mass (Da):82,044
Last modified:March 15, 2005 - v1
Checksum:i04B8B9225EE6798B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000021 Genomic DNA. Translation: AAW87878.1.
RefSeqiYP_206766.1. NC_006841.2.

Genome annotation databases

EnsemblBacteriaiAAW87878; AAW87878; VF_A0808.
GeneIDi3280626.
KEGGivfi:VF_A0808.
PATRICi20117613. VBIVibFis127983_3410.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000021 Genomic DNA. Translation: AAW87878.1 .
RefSeqi YP_206766.1. NC_006841.2.

3D structure databases

ProteinModelPortali Q5DZB8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 312309.VF_A0808.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAW87878 ; AAW87878 ; VF_A0808 .
GeneIDi 3280626.
KEGGi vfi:VF_A0808.
PATRICi 20117613. VBIVibFis127983_3410.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi GELSHAW.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci AFIS312309:GIWP-3563-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700601 / ES114.

Entry informationi

Entry nameiGLGB_VIBF1
AccessioniPrimary (citable) accession number: Q5DZB8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: March 15, 2005
Last modified: October 1, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3