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Q5DYV8

- DEOD3_VIBF1

UniProt

Q5DYV8 - DEOD3_VIBF1

Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD3

Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (15 Mar 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciAFIS312309:GIWP-3726-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNPUniRule annotation
    Gene namesi
    Name:deoD3UniRule annotation
    Ordered Locus Names:VF_A0968
    OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
    Taxonomic identifieri312309 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000000537: Chromosome II

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 239239Purine nucleoside phosphorylase DeoD-typePRO_0000063173Add
    BLAST

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi312309.VF_A0968.

    Structurei

    Secondary structure

    1
    239
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi15 – 195
    Helixi23 – 3311
    Beta strandi35 – 417
    Helixi43 – 453
    Beta strandi48 – 536
    Beta strandi56 – 616
    Helixi67 – 7812
    Turni79 – 813
    Beta strandi85 – 9410
    Beta strandi104 – 1129
    Helixi116 – 1205
    Turni121 – 1233
    Helixi132 – 14312
    Beta strandi149 – 1568
    Helixi166 – 1738
    Beta strandi178 – 1825
    Helixi183 – 19311
    Beta strandi196 – 20611
    Turni207 – 2104
    Helixi215 – 23521

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    4LDNX-ray1.48A1-239[»]
    ProteinModelPortaliQ5DYV8.
    SMRiQ5DYV8. Positions 2-235.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    HOGENOMiHOG000274896.
    KOiK03784.
    OMAiFALGWMR.
    OrthoDBiEOG6BKJC5.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5DYV8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSTPHINAPL DAFADTILMP GDPLRAKLIA ETYLENVVQV TDVRGMLGFT    50
    GEFKGRKISV MGHGMGAPSA SIYFHELMTT YKVKNFIRIG SCGAIHDDVK 100
    LKDLIVAIGA STDSKMNRIR FKDNDFAATA NYNMLSECVN TLKTTDINYL 150
    VGNVFSSDLF YRPDEEQYDM MARYGILGVE MEVNALYSAA AENHCNAVAL 200
    CTVTDHIKNH EHLTADERRT ELHEMINVAL DVALKLPTE 239
    Length:239
    Mass (Da):26,542
    Last modified:March 15, 2005 - v1
    Checksum:i0B35489AA6A19951
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000021 Genomic DNA. Translation: AAW88038.1.
    RefSeqiYP_206926.1. NC_006841.2.

    Genome annotation databases

    EnsemblBacteriaiAAW88038; AAW88038; VF_A0968.
    GeneIDi3280781.
    KEGGivfi:VF_A0968.
    PATRICi20117931. VBIVibFis127983_3569.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000021 Genomic DNA. Translation: AAW88038.1 .
    RefSeqi YP_206926.1. NC_006841.2.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    4LDN X-ray 1.48 A 1-239 [» ]
    ProteinModelPortali Q5DYV8.
    SMRi Q5DYV8. Positions 2-235.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 312309.VF_A0968.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAW88038 ; AAW88038 ; VF_A0968 .
    GeneIDi 3280781.
    KEGGi vfi:VF_A0968.
    PATRICi 20117931. VBIVibFis127983_3569.

    Phylogenomic databases

    eggNOGi COG0813.
    HOGENOMi HOG000274896.
    KOi K03784.
    OMAi FALGWMR.
    OrthoDBi EOG6BKJC5.

    Enzyme and pathway databases

    BioCyci AFIS312309:GIWP-3726-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700601 / ES114.

    Entry informationi

    Entry nameiDEOD3_VIBF1
    AccessioniPrimary (citable) accession number: Q5DYV8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: March 15, 2005
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3