Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q5DYT2 (Q5DYT2_VIBF1) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Hyaluronate lyase EMBL AAW88064.1
EC=4.2.2.1 EMBL AAW88064.1
Gene names
Ordered Locus Names:VF_A0994
OrganismVibrio fischeri (strain ATCC 700601 / ES114)
Taxonomic identifier312309 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio

Protein attributes

Sequence length802 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase EMBL AAW88064.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentextracellular region

Inferred from electronic annotation. Source: InterPro

   Molecular functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

hyaluronate lyase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5DYT2 [UniParc].

Last modified March 15, 2005. Version 1.
Checksum: 3B106E95DD227131

FASTA80290,247
        10         20         30         40         50         60 
MYMIKKHRLN TIALSMLFLF TGNAYAAKNT QTPQYLPSDF EQVRENWAEN YLGDPAITFD 

        70         80         90        100        110        120 
QTLKNMVTST NSSAQKHWDS MTPQPNASGI WDDLPLIDKD TTLGPNIRNS YQRLFTMAKA 

       130        140        150        160        170        180 
YRLRDGNLEN NQLMLNDIMT AMNYINQNFY FVNQLEYGNW WQWELAIPKD IHNILVLLFD 

       190        200        210        220        230        240 
DIKDNYQTII TNHLNATRYF TPDPTHLGVS PGAAESTNPN YRESTGGNRT DNAQVVLIRG 

       250        260        270        280        290        300 
MLENNSEEIS QAIAALPAVI EYVSEGDGYY TDGSFLQHSD IAYNGTYGNV LLGGLGIQMN 

       310        320        330        340        350        360 
AVAGSPWSMD NQTISNVYNI INQSYEPLLY KGAMMDMVNG RSISRSAEQN HDVGLNIVNS 

       370        380        390        400        410        420 
MLFYTNGPDS DKNKQLSSLI KTQITDDTYQ NFFDKIYYVS TYQAAQHIVN DPTVSLKDPL 

       430        440        450        460        470        480 
IGNFSYPSMD RIVHRRTDWA FALAMHSYRI GNYECMNGEN LKGWFTGDGM IYLYNDQLDH 

       490        500        510        520        530        540 
YTGYWPTVNA SRMPGTTVDS QIMADCSGER VGGNVNTNMQ WVGSTSLNNY GIAGMQFYNW 

       550        560        570        580        590        600 
SDTLSAYKSW FMFDNEVVML GSNIKDQSNA NNITTIENRK RLAETKLFID GTEQAALPYQ 

       610        620        630        640        650        660 
GAPATFSIRN KTLANSDLSY VMLTPKTISI SQNDVDGNWS DIGNSKGDVS DSYLQATLTQ 

       670        680        690        700        710        720 
VDQADYQYAL LPNQNNDTVQ NYAQHPDVTV LRQDEQAHAV QENTLNIIAA NNWKNNPVNI 

       730        740        750        760        770        780 
TDTITLNSMM GFMIKEESSN TFTVAVSEPI QTIDSVNFTF DKQGIVIKED IENRVVLNGT 

       790        800 
TLTINTSGLQ GQSYSFQVTI QD

« Hide

References

[1]"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners."
Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P.
Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed: 15703294] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000021 Genomic DNA. Translation: AAW88064.1.
RefSeqYP_206952.1. NC_006841.2.

3D structure databases

ProteinModelPortalQ5DYT2.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ5DYT2.

Protein family/group databases

CAZyPL8. Polysaccharide Lyase Family 8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3280720.
GenomeReviewsGene locus VF_A0994 in contig CP000021_GR.
KEGGvfi:VF_A0994.
NMPDRfig|312309.3.peg.3450.
PATRIC20117981. VBIVibFis127983_3594.

Phylogenomic databases

eggNOGNOG04835.
HOGENOMHBG740693.
OMATKTYRNI.
ProtClustDBCLSK257327.

Enzyme and pathway databases

BioCycVFIS312309:VFA0994-MONOMER.

Family and domain databases

InterProIPR008929. Chondroitin_lyas.
IPR011013. Glyco_hydro-type_carb-bd.
IPR014718. Glyco_hydro-type_carb-bd_sub.
IPR011071. Lyase_8-like_C.
IPR012970. Lyase_8_alpha_N.
IPR004103. Lyase_8_C.
IPR003159. Lyase_8_central_dom.
IPR012329. Lyase_8_N.
[Graphical view]
Gene3DG3DSA:2.70.98.10. Glyco_hydro_42_D5. 1 hit.
G3DSA:2.60.220.10. Lyase_8_C. 1 hit.
G3DSA:1.50.10.100. Lyase_8_N. 1 hit.
KOK01727.
PfamPF02278. Lyase_8. 1 hit.
PF02884. Lyase_8_C. 1 hit.
PF08124. Lyase_8_N. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
SSF74650. Gal_mut_like. 1 hit.
SSF49863. Lyase_like_C. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ5DYT2_VIBF1
AccessionPrimary (citable) accession number: Q5DYT2
Entry history
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: December 14, 2011
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info