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Q5DNL9 (Q5DNL9_9HIV1) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:pol EMBL AAT66854.1
OrganismHuman immunodeficiency virus 1 EMBL AAT66854.1
Taxonomic identifier11676 [NCBI]
Taxonomic lineageVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length560 AA.
Sequence statusFragment.
Protein existencePredicted

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). SAAS SAAS002156

Sequence similarities

Contains 1 reverse transcriptase domain. RuleBase RU000322

Contains RNase H domain. SAAS SAAS000477

Contains peptidase Adomain.

Contains reverse transcriptase domain. SAAS SAAS002156

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAT66854.1
Non-terminal residue5601 EMBL AAT66854.1

Sequences

Sequence LengthMass (Da)Tools
Q5DNL9 [UniParc].

Last modified March 29, 2005. Version 1.
Checksum: ADF0EB05EA4B45FD

FASTA56064,299
        10         20         30         40         50         60 
PISPIETVPV QLKPGMDGPK VKQWPLTEEK IKALVEICTE MEKEGKISKI GPENPYNTPV 

        70         80         90        100        110        120 
FAIKKKDSTK WRKLVDFREL NKKTQDFWEV QLGIPHPAGL KKKKSVTVLD VGDAYFSVPL 

       130        140        150        160        170        180 
DPDFRKYTAF TIPSINNETP GIRYQYNVLP QGWKGSPAIF QSSMTKILEP FRKQNPEIVI 

       190        200        210        220        230        240 
YQYMDDLYVG SDLEIGQHRT KIEELRQHLL RWGLTTPDKK HQKEPPFLWM GYELHPDKWA 

       250        260        270        280        290        300 
VQPIVLPEKD SWTVNDIQKL VGKLNWASQI YAGIKVRELC KLLRGTKALT EVIPLTEEAE 

       310        320        330        340        350        360 
LELAENREIL KEPVHGVYYD PSKDLIAEIQ KQGQGQWTYQ IYQEPFKNLK TGKYARMRGA 

       370        380        390        400        410        420 
HTNDVKQLTE AVQKIAMESI VIWGKTPKFR LPIQKETWET WWAEYWQATW IPEWEFVNTP 

       430        440        450        460        470        480 
PLVKLWYQLE KEPIVGAETF YVDGAANRET KLGKAGYVTD KGRQKVVSLT DTTNQKTELQ 

       490        500        510        520        530        540 
AIHLALQDSG SEVNIVTDSQ YALGIIQAQP DKSESELVNQ IIEQLINKEK VYLAWVPAHK 

       550        560 
GIGGNEQVDK LVSTGIRKVL 

« Hide

References

[1]"Genetic Characterization of HIV Type 1 Reverse Transcriptase Gene From Mothers and Infants Following Perinatal Transmission."
Sundaravaradan V., Hahn T., Ahmad N.
Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY560468 Genomic DNA. Translation: AAT66854.1.

3D structure databases

ProteinModelPortalQ5DNL9.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D3.30.420.10. 1 hit.
InterProIPR012337. RNaseH-like_dom.
IPR002156. RNaseH_domain.
IPR000477. RT_dom.
IPR010659. RVT_connect.
IPR010661. RVT_thumb.
[Graphical view]
PfamPF00075. RNase_H. 1 hit.
PF00078. RVT_1. 1 hit.
PF06815. RVT_connect. 1 hit.
PF06817. RVT_thumb. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
PROSITEPS50879. RNASE_H. 1 hit.
PS50878. RT_POL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5DNL9_9HIV1
AccessionPrimary (citable) accession number: Q5DNL9
Entry history
Integrated into UniProtKB/TrEMBL: March 29, 2005
Last sequence update: March 29, 2005
Last modified: July 9, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)