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Protein
Submitted name:

PvdM

Gene

pvdM

Organism
Pseudomonas aeruginosa
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi45 – 451Calcium 1; via tele nitrogenCombined sources
Metal bindingi120 – 1201Calcium 2Combined sources
Metal bindingi124 – 1241Calcium 2; via tele nitrogenCombined sources
Metal bindingi420 – 4201Calcium 1Combined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
PvdMImported
Gene namesi
Name:pvdMImported
OrganismiPseudomonas aeruginosaImported
Taxonomic identifieri287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3B40X-ray2.00A36-448[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

InterProiIPR032466. Metal_Hydrolase.
IPR008257. Renal_dipep_fam.
[Graphical view]
PANTHERiPTHR10443. PTHR10443. 2 hits.
PfamiPF01244. Peptidase_M19. 1 hit.
[Graphical view]
SUPFAMiSSF51556. SSF51556. 2 hits.
PROSITEiPS51365. RENAL_DIPEPTIDASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5DIQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRTRKRTAL YLGLPLFIVL LAAGGWLAWT QWLGSAGYPR KVMQHAEELH
60 70 80 90 100
ERILSFDSRI TVPLDFGTTG NEVDKDGPGQ LDLVKAGRGR LSGAALAIFG
110 120 130 140 150
WPEMWNGPNA PHKPTPGFVD EARHQQEIRY KILTGMVRDF PNQVGIAYSP
160 170 180 190 200
EDFRRLAMEG KFAIVMSMLN AYPLGDDLSQ LDKWAARGVR MFGFSYVGNN
210 220 230 240 250
DWADSSRPLP FFNDSPDALG GLSPLGKQAV ERLNDLGVII DVSQMSTKAL
260 270 280 290 300
EQVAALSRAP IVASHSAPRA LVDIKRNLSD HEMQLIKDSG GVIQVVGFPA
310 320 330 340 350
YLRPLSKPTL DKLDALRARF DLPPLEGLDY ALMPGDPIIT IWPEQRFGEY
360 370 380 390 400
ASALYGILEE EPKAGLKELV DAIDYTVKKV GIDHVGISSD FNDGGGVDGW
410 420 430 440
KDVSEIRNVT AELITRGYSD ADIAKLWGGN FLRAWGEVQK RAKPTATP
Length:448
Mass (Da):49,284
Last modified:March 29, 2005 - v1
Checksum:iFC72888CA83700FE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY765263 Genomic DNA. Translation: AAX16353.1.
RefSeqiWP_003450962.1. NZ_LSAD01000005.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY765263 Genomic DNA. Translation: AAX16353.1.
RefSeqiWP_003450962.1. NZ_LSAD01000005.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3B40X-ray2.00A36-448[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR032466. Metal_Hydrolase.
IPR008257. Renal_dipep_fam.
[Graphical view]
PANTHERiPTHR10443. PTHR10443. 2 hits.
PfamiPF01244. Peptidase_M19. 1 hit.
[Graphical view]
SUPFAMiSSF51556. SSF51556. 2 hits.
PROSITEiPS51365. RENAL_DIPEPTIDASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa."
    Smith E.E., Sims E.H., Spencer D.H., Kaul R., Olson M.V.
    J. Bacteriol. 187:2138-2147(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MSHImported.
  2. "Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa."
    Bonanno J.B., Patskovsky Y., Dickey M., Bain K.T., Mendoza M., Fong R., Smith D., Wasserman S., Sauder J.M., Burley S.K., Almo S.C.
    Submitted (OCT-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 36-448 IN COMPLEX WITH CALCIUM.

Entry informationi

Entry nameiQ5DIQ1_PSEAI
AccessioniPrimary (citable) accession number: Q5DIQ1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 29, 2005
Last sequence update: March 29, 2005
Last modified: July 6, 2016
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.