Acyl-coenzyme A oxidase - Solanum lycopersicum (Tomato)

Preferred order of sections

Names and origin

Protein names

Recommended name:
Acyl-coenzyme A oxidase PIRNR PIRNR000168

Gene names

Name:

Acx1A EMBL AAW78689.1

Organism

Solanum lycopersicum (Tomato) (Lycopersicon esculentum) EMBL AAW78689.1

Taxonomic identifier

4081 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Lycopersicon

Protein attributes

Sequence length	664 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the acyl-CoA oxidase family. PIRNR PIRNR000168

Ontologies

Keywords
Ligand	FAD PIRNR PIRNR000168 PDB 2FON Flavoprotein PIRNR PIRNR000168 PDB 2FON Nucleotide-binding PDB 2FON
Technical term	3D-structure PDB 2FON
Gene Ontology (GO)
Biological process	fatty acid beta-oxidation Inferred from electronic annotation. Source: InterPro
Cellular component	peroxisome Inferred from electronic annotation. Source: InterPro
Molecular function	acyl-CoA dehydrogenase activity Inferred from electronic annotation. Source: InterPro acyl-CoA oxidase activity Inferred from electronic annotation. Source: InterPro flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

135 – 138

4

FAD PDB 2FON

Nucleotide binding

175 – 177

3

FAD PDB 2FON

Nucleotide binding

327 – 333

7

FAD PDB 2FON

Nucleotide binding

398 – 401

4

FAD PDB 2FON

Sites

Binding site

144

1

FAD PDB 2FON

Binding site

310

1

FAD PDB 2FON

Binding site

422

1

FAD PDB 2FON

Binding site

426

1

FAD PDB 2FON

Sequences

Sequence

Length

Mass (Da)

Tools

Q5D8D3 [UniParc].

Last modified March 29, 2005. Version 1.
Checksum: 3783ABE325884300
Show »

FASTA

664

74,246

        10         20         30         40         50         60 
MEGVDYLADE RKKAGFDVDE MKIVWAGSRH DFELTDRISK LVASDPGFSK EGRTMLPRKE 

        70         80         90        100        110        120 
LFKNTLRKAA YAWKRIIELR LSQEEATMLR RYVDEPAFTD LHWGMFIPAI KGQGTDKQQE 

       130        140        150        160        170        180 
KWLPLAYKMQ IIGCYAQTEL GHGSNVQGLE TTATFDPQTD EFVIHSPTLT SSKWWPGGLG 

       190        200        210        220        230        240 
KVSTHAVVYA RLITDGKDYG VNGFIVQLRS LEDHKPLPGV TVGDIGMKFG NGAYNSMDNG 

       250        260        270        280        290        300 
VLSFDHVRIP RDQMLMRVSQ VTKEGKYVQS DIPRQLLYGT MVYVRQSIVA DASLAMSRAV 

       310        320        330        340        350        360 
CIATRYSAVR RQFGSQNGGQ ETQVIDYKTQ QNRLFPLLAS AYAFRFVGEW LKWLYTDVTQ 

       370        380        390        400        410        420 
RLAANDFSTL PEAHACTAGL KSLTTSATAD GIEECRKLCG GHGYLCSSGL PELFAVYVPA 

       430        440        450        460        470        480 
CTYEGDNVVL QLQVARFLMK TISQLGTGKK PVGTVSYMGR IEHLMQCRSD VKQAEDWLKP 

       490        500        510        520        530        540 
SAVLEAFEAR SARMSVACAK NLSKFENQEE GFAELAADLV EAAVAHCQLI VVSKYIEKLQ 

       550        560        570        580        590        600 
QNIPGKGVKQ QLEVLCGIYS LFILHKHQGD FLGTGYITSK QGSLANDQLR ALYSQLRPNA 

       610        620        630        640        650        660 
VSLVDAFNYT DHYLGSILGR YDGNVYPKLY EAAWKDPLNK SDIADGFHEY IRPLLKQQLR 


TAKL

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References

[1]	Schilmiller A.L., Li C., Howe G.A. Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Structure determination and analysis of acyl-CoA oxidase (ACX1) from tomato." Powers R.A., Rife C.L., Schilmiller A.L., Howe G.A., Garavito R.M. Acta Crystallogr. D Biol. Crystallogr. 62:683-686(2006) [PubMed: 16699197] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.74 ANGSTROMS) IN COMPLEX WITH FAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AY817109 mRNA. Translation: AAW78689.1.

RefSeq

NP_001234198.1. NM_001247269.1.

UniGene

Les.14658.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2FON	X-ray	2.74	A/B/C	1-664	[»]

ProteinModelPortal

Q5D8D3.

SMR

Q5D8D3. Positions 3-658.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

778338.

Family and domain databases

InterPro

IPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR012258. Acyl-CoA_oxidase.
IPR002655. Acyl-CoA_oxidase_C.
IPR023570. Acyl-CoA_oxidase_perosiome.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase.
[Graphical view]

Gene3D

G3DSA:2.40.110.10. Acyl_CoA_DH/ox_M. 1 hit.
G3DSA:1.10.540.10. AcylCoA_DH/ox_N. 1 hit.
G3DSA:1.20.140.10. AcylCoA_DH_1/2_C. 2 hits.

PANTHER

PTHR10909:SF11. Acyl-CoA_oxidase. 1 hit.

Pfam

PF01756. ACOX. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
[Graphical view]

PIRSF

PIRSF000168. Acyl-CoA_oxidase. 1 hit.

SUPFAM

SSF56645. AcylCoA_dehyd_NM. 1 hit.
SSF47203. AcylCoADH_C_like. 2 hits.

ProtoNet

Search...

Entry information

Entry name

Q5D8D3_SOLLC

Accession

Primary (citable) accession number: Q5D8D3

Entry history

Integrated into UniProtKB/TrEMBL:	March 29, 2005
Last sequence update:	March 29, 2005
Last modified:	December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)