Q5BKI5 (Q5BKI5_XENTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pyruvate dehydrogenase (Lipoamide) beta EMBL AAH91061.1

Submitted name:
Uncharacterized protein Ensembl ENSXETP00000019009

Gene names

Name:	pdhb EMBL AAH91061.1 Xenbase XB-GENE-977343 Xenbase XB-FEAT-977343 Ensembl ENSXETP00000019009 Xenbase XB-FEAT-977342
ORF Names:	TEgg035n19.1-001 EMBL CAJ81945.1

Organism

Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) EMBL AAH91061.1

Taxonomic identifier

8364 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Amphibia › Batrachia › Anura › Mesobatrachia › Pipoidea › Pipidae › Xenopodinae › Xenopus › Silurana

Protein attributes

Sequence length	360 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Ligand	Pyruvate EMBL AAH91061.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	Q5BKI5 [UniParc]. Last modified April 12, 2005. Version 1. Checksum: 318488872F12B951	FASTA	360	39,281
	10 20 30 40 50 60 MAALRSLFCG GKSSVSVFLK RSFHRSTPAA LQVTVRDALN QAIDEEIERD ERVFLLGEEV 70 80 90 100 110 120 AQYDGAYKIS RGLWKKYGDK RVMDTPISEM GFAGIAVGAA MAGLRPICEF MTFNFSMQAI 130 140 150 160 170 180 DQVINSAAKT YYMSAGLVPV PIVFRGPNGA SAGVAAQHSQ CFAAWYAHCP GLKVVSPWNA 190 200 210 220 230 240 EDAKGLLKSA IRDNNPVVFL ENELMYGVPF ELSEQAQSKD YVIPIGKAKI ERPGSQITLV 250 260 270 280 290 300 SHSRSVGHCL EAANVLAKEG VDCEVINMRT IRPMDIETIE TSVVKTNHLV TVEGGWPQFG 310 320 330 340 350 360 VGSEICAKIM EGPAFNYLDA PVVRVTGTDV PMPYAKILEE NCVPQVKDII FAVKKTLNLL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of the Western clawed frog Xenopus tropicalis." Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J., Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L., Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R., Gerhard D.S. , Goodstein D., Graves T., Grigoriev I.V., Grimwood J., Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H., Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K., Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A., Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T., Khokha M.K., Richardson P.M., Rokhsar D.S. Science 328:633-636(2010) [PubMed: 20431018] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]	NIH - Xenopus Gene Collection (XGC) project Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Whole body EMBL AAH91061.1.
[3]	Ensembl Submitted (JUN-2011) to UniProtKB Cited for: IDENTIFICATION.
[4]	Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K., Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V., McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J., Zorn A.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AAMC01040757 Genomic DNA. No translation available. AAMC01040758 Genomic DNA. No translation available. BC091061 mRNA. Translation: AAH91061.1. CR926329 mRNA. Translation: CAJ81945.1.
RefSeq	NP_001016212.1. NM_001016212.2.
UniGene	Str.12502.
3D structure databases
ProteinModelPortal	Q5BKI5.
SMR	Q5BKI5. Positions 30-359.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5BKI5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSXETT00000019009; ENSXETP00000019009; ENSXETG00000008685.
GeneID	548966.
KEGG	xtr:548966.
Organism-specific databases
CTD	5162.
Xenbase	XB-GENE-977343. pdhb.
Phylogenomic databases
eggNOG	veNOG04047.
GeneTree	ENSGT00530000063423.
HOGENOM	HBG753264.
HOVERGEN	HBG000917.
InParanoid	Q5BKI5.
OMA	MEHAFDY.
OrthoDB	EOG4CJVHD.
PhylomeDB	Q5BKI5.
Gene expression databases
Bgee	Q5BKI5.
Family and domain databases
InterPro	IPR009014. Transketo_C/Pyr-ferredox_oxred. IPR015941. Transketolase-like_C. IPR005475. Transketolase-like_Pyr-bd. IPR005476. Transketolase_C. [Graphical view]
Gene3D	G3DSA:3.40.50.920. Transketo_C_like. 1 hit.
KO	K00162.
Pfam	PF02779. Transket_pyr. 1 hit. PF02780. Transketolase_C. 1 hit. [Graphical view]
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
SUPFAM	SSF52922. Transketo_C_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5BKI5_XENTR

Accession

Primary (citable) accession number: Q5BKI5

Entry history

Integrated into UniProtKB/TrEMBL:	April 12, 2005
Last sequence update:	April 12, 2005
Last modified:	November 16, 2011
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)