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Q5BK97

- Q5BK97_RAT

UniProt

Q5BK97 - Q5BK97_RAT

Protein
Submitted name:

Neu2 protein

Gene

Neu2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (12 Apr 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. exo-alpha-(2->3)-sialidase activity Source: Ensembl

    GO - Biological processi

    1. ganglioside catabolic process Source: Ensembl
    2. oligosaccharide catabolic process Source: Ensembl

    Enzyme and pathway databases

    ReactomeiREACT_198596. Glycosphingolipid metabolism.
    REACT_213723. Sialic acid metabolism.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Neu2 proteinImported
    Submitted name:
    Sialidase-2Imported
    Gene namesi
    Name:Neu2Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 9

    Organism-specific databases

    RGDi3164. Neu2.

    Expressioni

    Gene expression databases

    GenevestigatoriQ5BK97.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000011171.
    HOVERGENiHBG052608.
    InParanoidiQ5BK97.
    KOiK12357.
    OMAiIGRAHRE.
    OrthoDBiEOG7MSMNP.
    TreeFamiTF331063.

    Family and domain databases

    Gene3Di2.120.10.10. 1 hit.
    InterProiIPR026945. Sialidase-2.
    IPR026856. Sialidase_fam.
    IPR011040. Sialidases.
    [Graphical view]
    PANTHERiPTHR10628. PTHR10628. 1 hit.
    PTHR10628:SF6. PTHR10628:SF6. 1 hit.
    SUPFAMiSSF50939. SSF50939. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q5BK97-1 [UniParc]FASTAAdd to Basket

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    METCPVLQKE TLFHTEVYAY RIPALLYLKK QKTLLAFAEK RASRTDEHAE    50
    LIVLRRGSYN GATNHVKWQP EEVVTQAQLE GHRSMNPCPL YDKQTKTLFL 100
    FFIAVPGRVS EQHQLQTRVN VTRLCRVTST DYGMNWSPVQ DLTETTIGST 150
    HQDWATFAVG PGHCLQLRNR AGSLLVPAYA YQKLHPVHKP TPFAFCFISL 200
    DHGHTWELGN FVSENSLECQ VAEVGTGAHR VVYLNARSFI GARVQAQSPN 250
    DGLDFQDNQV VSKLVEPPHG CHGSVVAFHS PTSKPDALDM WLLYTHPTDS 300
    RNRTNLGVYL NQTPLDPTAW SEPTLLATGT CAYSDLQNMG RGPDGSPQFG 350
    CLYESGNYDE IIFLMFTLKQ AFPTVHGAQ 379
    Length:379
    Mass (Da):42,435
    Last modified:April 12, 2005 - v1
    Checksum:i3F1253F5AFCEF049
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06061473 Genomic DNA. No translation available.
    BC091154 mRNA. Translation: AAH91154.1.
    RefSeqiNP_058826.2. NM_017130.2.
    XP_006245422.1. XM_006245360.1.
    XP_006245423.1. XM_006245361.1.
    XP_006245424.1. XM_006245362.1.
    XP_006245425.1. XM_006245363.1.
    XP_006245426.1. XM_006245364.1.
    XP_006245427.1. XM_006245365.1.
    UniGeneiRn.9731.

    Genome annotation databases

    EnsembliENSRNOT00000022818; ENSRNOP00000022818; ENSRNOG00000016962.
    GeneIDi29204.
    KEGGirno:29204.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06061473 Genomic DNA. No translation available.
    BC091154 mRNA. Translation: AAH91154.1 .
    RefSeqi NP_058826.2. NM_017130.2.
    XP_006245422.1. XM_006245360.1.
    XP_006245423.1. XM_006245361.1.
    XP_006245424.1. XM_006245362.1.
    XP_006245425.1. XM_006245363.1.
    XP_006245426.1. XM_006245364.1.
    XP_006245427.1. XM_006245365.1.
    UniGenei Rn.9731.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000022818 ; ENSRNOP00000022818 ; ENSRNOG00000016962 .
    GeneIDi 29204.
    KEGGi rno:29204.

    Organism-specific databases

    CTDi 4759.
    RGDi 3164. Neu2.

    Phylogenomic databases

    GeneTreei ENSGT00390000011171.
    HOVERGENi HBG052608.
    InParanoidi Q5BK97.
    KOi K12357.
    OMAi IGRAHRE.
    OrthoDBi EOG7MSMNP.
    TreeFami TF331063.

    Enzyme and pathway databases

    Reactomei REACT_198596. Glycosphingolipid metabolism.
    REACT_213723. Sialic acid metabolism.

    Miscellaneous databases

    NextBioi 608366.
    PROi Q5BK97.

    Gene expression databases

    Genevestigatori Q5BK97.

    Family and domain databases

    Gene3Di 2.120.10.10. 1 hit.
    InterProi IPR026945. Sialidase-2.
    IPR026856. Sialidase_fam.
    IPR011040. Sialidases.
    [Graphical view ]
    PANTHERi PTHR10628. PTHR10628. 1 hit.
    PTHR10628:SF6. PTHR10628:SF6. 1 hit.
    SUPFAMi SSF50939. SSF50939. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: LiverImported.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiQ5BK97_RAT
    AccessioniPrimary (citable) accession number: Q5BK97
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 12, 2005
    Last sequence update: April 12, 2005
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3