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Q5BK38

- TM156_RAT

UniProt

Q5BK38 - TM156_RAT

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Protein
Transmembrane protein 156
Gene
Tmem156
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Transmembrane protein 156
Gene namesi
Name:Tmem156
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 14

Organism-specific databases

RGDi1562424. Tmem156.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 44Cytoplasmic Reviewed prediction
Transmembranei5 – 2521Helical; Reviewed prediction
Add
BLAST
Topological domaini26 – 214189Extracellular Reviewed prediction
Add
BLAST
Transmembranei215 – 23521Helical; Reviewed prediction
Add
BLAST
Topological domaini236 – 28651Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 286286Transmembrane protein 156
PRO_0000284506Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi45 – 451N-linked (GlcNAc...) Reviewed prediction
Glycosylationi54 – 541N-linked (GlcNAc...) Reviewed prediction
Glycosylationi76 – 761N-linked (GlcNAc...) Reviewed prediction
Glycosylationi142 – 1421N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiQ5BK38.

Expressioni

Gene expression databases

GenevestigatoriQ5BK38.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG28044.
GeneTreeiENSGT00390000017929.
HOGENOMiHOG000154613.
HOVERGENiHBG098801.
InParanoidiQ5BK38.
OMAiCIHISLH.
OrthoDBiEOG79SDXW.
PhylomeDBiQ5BK38.
TreeFamiTF336964.

Family and domain databases

InterProiIPR029374. TMEM156.
[Graphical view]
PfamiPF15106. TMEM156. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5BK38-1 [UniParc]FASTAAdd to Basket

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MTETAFLKLF VAIVITFILV LPEFFKTPKE RTLELSCLEV CFLPNSTYPL    50
SSFNFSSVAF LQPAEETQTI MGILPNHSSF QSFAEICQGI TSGLPMCSLC 100
LVCESKGDVD FTSQEQTSKG LVMRGSKEVK ASDFYSPCEY FNVTVALLAD 150
PVKEDTTCTP EGHPGEAIAL DEDPVREKSL NHTCRFMKNT DNCTHIFLHL 200
EMDVKSVTCS MKITWYVLVL FVFMLGIIFI IYKILEEHRR VWRRQSHNYK 250
SSSVLFRGHD SGKLSTLNVR VIPGYPWTIW TRDFDE 286
Length:286
Mass (Da):32,552
Last modified:April 12, 2005 - v1
Checksum:i57AB8B4FC976EE7F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC091217 mRNA. Translation: AAH91217.1.
RefSeqiNP_001020309.1. NM_001025138.1.
XP_006251029.1. XM_006250967.1.
UniGeneiRn.41435.

Genome annotation databases

EnsembliENSRNOT00000032273; ENSRNOP00000032292; ENSRNOG00000026518.
GeneIDi498365.
KEGGirno:498365.
UCSCiRGD:1562424. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC091217 mRNA. Translation: AAH91217.1 .
RefSeqi NP_001020309.1. NM_001025138.1.
XP_006251029.1. XM_006250967.1.
UniGenei Rn.41435.

3D structure databases

ModBasei Search...

Proteomic databases

PRIDEi Q5BK38.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000032273 ; ENSRNOP00000032292 ; ENSRNOG00000026518 .
GeneIDi 498365.
KEGGi rno:498365.
UCSCi RGD:1562424. rat.

Organism-specific databases

CTDi 80008.
RGDi 1562424. Tmem156.

Phylogenomic databases

eggNOGi NOG28044.
GeneTreei ENSGT00390000017929.
HOGENOMi HOG000154613.
HOVERGENi HBG098801.
InParanoidi Q5BK38.
OMAi CIHISLH.
OrthoDBi EOG79SDXW.
PhylomeDBi Q5BK38.
TreeFami TF336964.

Miscellaneous databases

NextBioi 699561.
PROi Q5BK38.

Gene expression databases

Genevestigatori Q5BK38.

Family and domain databases

InterProi IPR029374. TMEM156.
[Graphical view ]
Pfami PF15106. TMEM156. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Thymus.

Entry informationi

Entry nameiTM156_RAT
AccessioniPrimary (citable) accession number: Q5BK38
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: April 12, 2005
Last modified: June 11, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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