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Q5BK38

- TM156_RAT

UniProt

Q5BK38 - TM156_RAT

Protein

Transmembrane protein 156

Gene

Tmem156

Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 48 (01 Oct 2014)
      Sequence version 1 (12 Apr 2005)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Transmembrane protein 156
    Gene namesi
    Name:Tmem156
    OrganismiRattus norvegicus (Rat)
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 14

    Organism-specific databases

    RGDi1562424. Tmem156.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 286286Transmembrane protein 156PRO_0000284506Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi45 – 451N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi54 – 541N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi76 – 761N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi142 – 1421N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PRIDEiQ5BK38.

    Expressioni

    Gene expression databases

    GenevestigatoriQ5BK38.

    Structurei

    Topological domain

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Topological domaini1 – 44CytoplasmicSequence Analysis
    Topological domaini26 – 214189ExtracellularSequence AnalysisAdd
    BLAST
    Topological domaini236 – 28651CytoplasmicSequence AnalysisAdd
    BLAST

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei5 – 2521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei215 – 23521HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiNOG28044.
    GeneTreeiENSGT00390000017929.
    HOGENOMiHOG000154613.
    HOVERGENiHBG098801.
    InParanoidiQ5BK38.
    OMAiCIHISLH.
    OrthoDBiEOG79SDXW.
    PhylomeDBiQ5BK38.
    TreeFamiTF336964.

    Family and domain databases

    InterProiIPR029374. TMEM156.
    [Graphical view]
    PfamiPF15106. TMEM156. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5BK38-1 [UniParc]FASTAAdd to Basket

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    MTETAFLKLF VAIVITFILV LPEFFKTPKE RTLELSCLEV CFLPNSTYPL    50
    SSFNFSSVAF LQPAEETQTI MGILPNHSSF QSFAEICQGI TSGLPMCSLC 100
    LVCESKGDVD FTSQEQTSKG LVMRGSKEVK ASDFYSPCEY FNVTVALLAD 150
    PVKEDTTCTP EGHPGEAIAL DEDPVREKSL NHTCRFMKNT DNCTHIFLHL 200
    EMDVKSVTCS MKITWYVLVL FVFMLGIIFI IYKILEEHRR VWRRQSHNYK 250
    SSSVLFRGHD SGKLSTLNVR VIPGYPWTIW TRDFDE 286
    Length:286
    Mass (Da):32,552
    Last modified:April 12, 2005 - v1
    Checksum:i57AB8B4FC976EE7F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC091217 mRNA. Translation: AAH91217.1.
    RefSeqiNP_001020309.1. NM_001025138.1.
    XP_006251029.1. XM_006250967.1.
    UniGeneiRn.41435.

    Genome annotation databases

    EnsembliENSRNOT00000032273; ENSRNOP00000032292; ENSRNOG00000026518.
    GeneIDi498365.
    KEGGirno:498365.
    UCSCiRGD:1562424. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC091217 mRNA. Translation: AAH91217.1 .
    RefSeqi NP_001020309.1. NM_001025138.1.
    XP_006251029.1. XM_006250967.1.
    UniGenei Rn.41435.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q5BK38.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000032273 ; ENSRNOP00000032292 ; ENSRNOG00000026518 .
    GeneIDi 498365.
    KEGGi rno:498365.
    UCSCi RGD:1562424. rat.

    Organism-specific databases

    CTDi 80008.
    RGDi 1562424. Tmem156.

    Phylogenomic databases

    eggNOGi NOG28044.
    GeneTreei ENSGT00390000017929.
    HOGENOMi HOG000154613.
    HOVERGENi HBG098801.
    InParanoidi Q5BK38.
    OMAi CIHISLH.
    OrthoDBi EOG79SDXW.
    PhylomeDBi Q5BK38.
    TreeFami TF336964.

    Miscellaneous databases

    NextBioi 699561.
    PROi Q5BK38.

    Gene expression databases

    Genevestigatori Q5BK38.

    Family and domain databases

    InterProi IPR029374. TMEM156.
    [Graphical view ]
    Pfami PF15106. TMEM156. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Thymus.

    Entry informationi

    Entry nameiTM156_RAT
    AccessioniPrimary (citable) accession number: Q5BK38
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 17, 2007
    Last sequence update: April 12, 2005
    Last modified: October 1, 2014
    This is version 48 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    External Data

    Dasty 3