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Protein

Transmembrane protein 156

Gene

Tmem156

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Transmembrane protein 156
Gene namesi
Name:Tmem156
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 14

Organism-specific databases

RGDi1562424. Tmem156.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 4CytoplasmicSequence analysis4
Transmembranei5 – 25HelicalSequence analysisAdd BLAST21
Topological domaini26 – 214ExtracellularSequence analysisAdd BLAST189
Transmembranei215 – 235HelicalSequence analysisAdd BLAST21
Topological domaini236 – 286CytoplasmicSequence analysisAdd BLAST51

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002845061 – 286Transmembrane protein 156Add BLAST286

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi45N-linked (GlcNAc...)Sequence analysis1
Glycosylationi54N-linked (GlcNAc...)Sequence analysis1
Glycosylationi76N-linked (GlcNAc...)Sequence analysis1
Glycosylationi142N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ5BK38.
PRIDEiQ5BK38.

Expressioni

Gene expression databases

BgeeiENSRNOG00000026518.
ExpressionAtlasiQ5BK38. baseline and differential.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IPSV. Eukaryota.
ENOG41116BG. LUCA.
GeneTreeiENSGT00390000017929.
HOGENOMiHOG000154613.
HOVERGENiHBG098801.
InParanoidiQ5BK38.
PhylomeDBiQ5BK38.
TreeFamiTF336964.

Family and domain databases

InterProiIPR029374. TMEM156.
[Graphical view]
PfamiPF15106. TMEM156. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5BK38-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTETAFLKLF VAIVITFILV LPEFFKTPKE RTLELSCLEV CFLPNSTYPL
60 70 80 90 100
SSFNFSSVAF LQPAEETQTI MGILPNHSSF QSFAEICQGI TSGLPMCSLC
110 120 130 140 150
LVCESKGDVD FTSQEQTSKG LVMRGSKEVK ASDFYSPCEY FNVTVALLAD
160 170 180 190 200
PVKEDTTCTP EGHPGEAIAL DEDPVREKSL NHTCRFMKNT DNCTHIFLHL
210 220 230 240 250
EMDVKSVTCS MKITWYVLVL FVFMLGIIFI IYKILEEHRR VWRRQSHNYK
260 270 280
SSSVLFRGHD SGKLSTLNVR VIPGYPWTIW TRDFDE
Length:286
Mass (Da):32,552
Last modified:April 12, 2005 - v1
Checksum:i57AB8B4FC976EE7F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091217 mRNA. Translation: AAH91217.1.
RefSeqiNP_001020309.1. NM_001025138.1.
UniGeneiRn.41435.

Genome annotation databases

EnsembliENSRNOT00000032273; ENSRNOP00000032292; ENSRNOG00000026518.
GeneIDi498365.
KEGGirno:498365.
UCSCiRGD:1562424. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091217 mRNA. Translation: AAH91217.1.
RefSeqiNP_001020309.1. NM_001025138.1.
UniGeneiRn.41435.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ5BK38.
PRIDEiQ5BK38.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000032273; ENSRNOP00000032292; ENSRNOG00000026518.
GeneIDi498365.
KEGGirno:498365.
UCSCiRGD:1562424. rat.

Organism-specific databases

CTDi80008.
RGDi1562424. Tmem156.

Phylogenomic databases

eggNOGiENOG410IPSV. Eukaryota.
ENOG41116BG. LUCA.
GeneTreeiENSGT00390000017929.
HOGENOMiHOG000154613.
HOVERGENiHBG098801.
InParanoidiQ5BK38.
PhylomeDBiQ5BK38.
TreeFamiTF336964.

Miscellaneous databases

PROiQ5BK38.

Gene expression databases

BgeeiENSRNOG00000026518.
ExpressionAtlasiQ5BK38. baseline and differential.

Family and domain databases

InterProiIPR029374. TMEM156.
[Graphical view]
PfamiPF15106. TMEM156. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTM156_RAT
AccessioniPrimary (citable) accession number: Q5BK38
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: April 12, 2005
Last modified: September 7, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.