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Q5BJY1 (Q5BJY1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length265 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Gene Ontology (GO)
   Biological_processATP catabolic process

Inferred from Biological aspect of Ancestor. Source: GOC

maintenance of DNA repeat elements

Inferred from Biological aspect of Ancestor. Source: RefGenome

meiotic mismatch repair

Inferred from Biological aspect of Ancestor. Source: RefGenome

negative regulation of DNA recombination

Inferred from electronic annotation. Source: Ensembl

positive regulation of helicase activity

Inferred from electronic annotation. Source: Ensembl

reciprocal meiotic recombination

Inferred from Biological aspect of Ancestor. Source: RefGenome

somatic recombination of immunoglobulin gene segments

Inferred from Biological aspect of Ancestor. Source: RefGenome

   Cellular_componentMutSbeta complex

Inferred from Biological aspect of Ancestor. Source: RefGenome

nuclear chromosome

Inferred from Biological aspect of Ancestor. Source: RefGenome

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA-dependent ATPase activity

Inferred from Biological aspect of Ancestor. Source: RefGenome

Y-form DNA binding

Inferred from Biological aspect of Ancestor. Source: RefGenome

centromeric DNA binding

Inferred from electronic annotation. Source: Ensembl

damaged DNA binding

Inferred from Biological aspect of Ancestor. Source: RefGenome

dinucleotide repeat insertion binding

Inferred from electronic annotation. Source: Ensembl

double-strand/single-strand DNA junction binding

Inferred from Biological aspect of Ancestor. Source: RefGenome

heteroduplex DNA loop binding

Inferred from Biological aspect of Ancestor. Source: RefGenome

oxidized purine DNA binding

Inferred from electronic annotation. Source: Ensembl

single guanine insertion binding

Inferred from electronic annotation. Source: Ensembl

single-stranded DNA binding

Inferred from electronic annotation. Source: Ensembl

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAH91283.1

Sequences

Sequence LengthMass (Da)Tools
Q5BJY1 [UniParc].

Last modified April 12, 2005. Version 1.
Checksum: 9585656EEF5A3AC5

FASTA26529,743
        10         20         30         40         50         60 
TNLSDSERVM IITGPNMGGK SSYIKQVALV VIMAQIGSYV PAEEATIGIV DGIFTRRGAA 

        70         80         90        100        110        120 
DNIYKGRSTF MEELTDTAEI IQKATQRSLV ILDELGRGTS THDGIAIAYA TLEYFIRDVK 

       130        140        150        160        170        180 
SLTLFVTHYP PVCELEKRYP EQVGNYHMGF LVNEDGSKQD SGDMEQMPDS VTFLYQITRG 

       190        200        210        220        230        240 
IAARSYGLNV AKLADVPREI LQKAAHKSKE LEGLVNLRRK RLEYFIDLWT THSVKDLHTR 

       250        260 
AAELEIQEIQ TSPHNEMKTT LLELK 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Ovary EMBL AAH91283.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC091283 mRNA. Translation: AAH91283.1.
UniGeneRn.162551.

3D structure databases

ProteinModelPortalQ5BJY1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000041452.

Proteomic databases

PaxDbQ5BJY1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1563954. rat.

Organism-specific databases

RGD1563954. Msh3.

Phylogenomic databases

eggNOGCOG0249.
HOGENOMHOG000029776.
HOVERGENHBG071048.
InParanoidQ5BJY1.
PhylomeDBQ5BJY1.

Gene expression databases

GenevestigatorQ5BJY1.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR000432. DNA_mismatch_repair_MutS_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamPF00488. MutS_V. 1 hit.
[Graphical view]
SMARTSM00534. MUTSac. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
PROSITEPS00486. DNA_MISMATCH_REPAIR_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5BJY1_RAT
AccessionPrimary (citable) accession number: Q5BJY1
Entry history
Integrated into UniProtKB/TrEMBL: April 12, 2005
Last sequence update: April 12, 2005
Last modified: July 9, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)