Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q5BJY1

- Q5BJY1_RAT

UniProt

Q5BJY1 - Q5BJY1_RAT

Protein
Submitted name:

Msh3 protein

Gene

Msh3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (12 Apr 2005)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. centromeric DNA binding Source: Ensembl
    3. damaged DNA binding Source: RefGenome
    4. dinucleotide repeat insertion binding Source: Ensembl
    5. DNA-dependent ATPase activity Source: RefGenome
    6. double-strand/single-strand DNA junction binding Source: RefGenome
    7. heteroduplex DNA loop binding Source: RefGenome
    8. oxidized purine DNA binding Source: Ensembl
    9. single guanine insertion binding Source: Ensembl
    10. single-stranded DNA binding Source: Ensembl
    11. Y-form DNA binding Source: RefGenome

    GO - Biological processi

    1. ATP catabolic process Source: GOC
    2. maintenance of DNA repeat elements Source: RefGenome
    3. meiotic mismatch repair Source: RefGenome
    4. negative regulation of DNA recombination Source: Ensembl
    5. positive regulation of helicase activity Source: Ensembl
    6. reciprocal meiotic recombination Source: RefGenome
    7. somatic recombination of immunoglobulin gene segments Source: RefGenome

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Msh3 proteinImported
    Gene namesi
    Name:Msh3Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1563954. Msh3.

    Subcellular locationi

    GO - Cellular componenti

    1. MutSbeta complex Source: RefGenome
    2. nuclear chromosome Source: RefGenome

    PTM / Processingi

    Proteomic databases

    PaxDbiQ5BJY1.

    Expressioni

    Gene expression databases

    GenevestigatoriQ5BJY1.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000041452.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5BJY1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0249.
    HOGENOMiHOG000029776.
    HOVERGENiHBG071048.
    InParanoidiQ5BJY1.
    PhylomeDBiQ5BJY1.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    InterProiIPR000432. DNA_mismatch_repair_MutS_C.
    IPR027417. P-loop_NTPase.
    [Graphical view]
    PfamiPF00488. MutS_V. 1 hit.
    [Graphical view]
    SMARTiSM00534. MUTSac. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    PROSITEiPS00486. DNA_MISMATCH_REPAIR_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q5BJY1-1 [UniParc]FASTAAdd to Basket

    « Hide

    TNLSDSERVM IITGPNMGGK SSYIKQVALV VIMAQIGSYV PAEEATIGIV    50
    DGIFTRRGAA DNIYKGRSTF MEELTDTAEI IQKATQRSLV ILDELGRGTS 100
    THDGIAIAYA TLEYFIRDVK SLTLFVTHYP PVCELEKRYP EQVGNYHMGF 150
    LVNEDGSKQD SGDMEQMPDS VTFLYQITRG IAARSYGLNV AKLADVPREI 200
    LQKAAHKSKE LEGLVNLRRK RLEYFIDLWT THSVKDLHTR AAELEIQEIQ 250
    TSPHNEMKTT LLELK 265
    Length:265
    Mass (Da):29,743
    Last modified:April 12, 2005 - v1
    Checksum:i9585656EEF5A3AC5
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC091283 mRNA. Translation: AAH91283.1.
    UniGeneiRn.162551.

    Genome annotation databases

    UCSCiRGD:1563954. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC091283 mRNA. Translation: AAH91283.1 .
    UniGenei Rn.162551.

    3D structure databases

    ProteinModelPortali Q5BJY1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000041452.

    Proteomic databases

    PaxDbi Q5BJY1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:1563954. rat.

    Organism-specific databases

    RGDi 1563954. Msh3.

    Phylogenomic databases

    eggNOGi COG0249.
    HOGENOMi HOG000029776.
    HOVERGENi HBG071048.
    InParanoidi Q5BJY1.
    PhylomeDBi Q5BJY1.

    Gene expression databases

    Genevestigatori Q5BJY1.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    InterProi IPR000432. DNA_mismatch_repair_MutS_C.
    IPR027417. P-loop_NTPase.
    [Graphical view ]
    Pfami PF00488. MutS_V. 1 hit.
    [Graphical view ]
    SMARTi SM00534. MUTSac. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    PROSITEi PS00486. DNA_MISMATCH_REPAIR_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: OvaryImported.

    Entry informationi

    Entry nameiQ5BJY1_RAT
    AccessioniPrimary (citable) accession number: Q5BJY1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 12, 2005
    Last sequence update: April 12, 2005
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)