Q5BJS8 (Q5BJS8_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Itpr1 protein EMBL AAH91346.1

Gene names

Name:

Itpr1 RGD 2933

Organism

Rattus norvegicus (Rat) EMBL AAH91346.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	123 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	endoplasmic reticulum calcium ion homeostasis Inferred from electronic annotation. Source: Compara intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress Inferred from electronic annotation. Source: Compara post-embryonic development Inferred from electronic annotation. Source: Compara release of sequestered calcium ion into cytosol Inferred from electronic annotation. Source: Compara response to hypoxia Inferred from electronic annotation. Source: Compara voluntary musculoskeletal movement Inferred from electronic annotation. Source: Compara
Cellular_component	calcineurin complex Inferred from electronic annotation. Source: Compara endoplasmic reticulum membrane Inferred from electronic annotation. Source: Compara nuclear inner membrane Inferred from electronic annotation. Source: Compara nucleolus Inferred from electronic annotation. Source: Compara postsynaptic density Inferred from electronic annotation. Source: Compara sarcoplasmic reticulum Inferred from electronic annotation. Source: Compara
Molecular_function	intracellular ligand-gated calcium channel activity Inferred from electronic annotation. Source: Compara phosphatidylinositol binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAH91346.1

Sequences

	Sequence		Length	Mass (Da)
	Q5BJS8 [UniParc]. Last modified April 12, 2005. Version 1. Checksum: 50C33E512B23DC62	FASTA	123	14,484
	10 20 30 40 50 60 FEEHIKEEHN MWHYLCFIVL VKVKDSTEYT GPESYVAEMI RERNLDWFPR MRAMSLVSSD 70 80 90 100 110 120 SEGEQNELRN LQEKLESTMK LVTNLSGQLS ELKDQMTEQR KQKQRIGLLG HPPHMNVNPQ QPA

References

[1]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain EMBL AAH91346.1.

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Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC091346 mRNA. Translation: AAH91346.1.
IPI	IPI00230880.
RefSeq	NP_001007236.2. NM_001007235.2. NP_001257525.1. NM_001270596.1. NP_001257526.1. NM_001270597.1.
UniGene	Rn.170703. Rn.2135.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q5BJS8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	25262.
KEGG	rno:25262.
Organism-specific databases
CTD	3708.
RGD	2933. Itpr1.
Phylogenomic databases
HOGENOM	HOG000007660.
InParanoid	Q5BJS8.
KO	K04958.
OrthoDB	EOG4Z62MP.
Gene expression databases
ArrayExpress	Q5BJS8.
Genevestigator	Q5BJS8.
Family and domain databases
InterPro	IPR015925. Ryanodine_recept-rel. [Graphical view]
PANTHER	PTHR13715. PTHR13715. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5BJS8_RAT

Accession

Primary (citable) accession number: Q5BJS8

Entry history

Integrated into UniProtKB/TrEMBL:	April 12, 2005
Last sequence update:	April 12, 2005
Last modified:	April 3, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)