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Protein

Lipoma HMGIC fusion partner

Gene

Lhfp

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Lipoma HMGIC fusion partner
Gene namesi
Name:Lhfp
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1560177. Lhfp.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei84 – 10421HelicalSequence analysisAdd
BLAST
Transmembranei123 – 14321HelicalSequence analysisAdd
BLAST
Transmembranei166 – 18621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 200177Lipoma HMGIC fusion partnerPRO_0000244758Add
BLAST

Proteomic databases

PaxDbiQ5BJS2.

Expressioni

Gene expression databases

GenevisibleiQ5BJS2. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019057.

Family & Domainsi

Sequence similaritiesi

Belongs to the LHFP family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG4026. Eukaryota.
ENOG410XSUB. LUCA.
GeneTreeiENSGT00550000074479.
HOGENOMiHOG000007007.
HOVERGENiHBG080585.
InParanoidiQ5BJS2.
OMAiSTEWRIC.
OrthoDBiEOG7TF7BG.
PhylomeDBiQ5BJS2.
TreeFamiTF321143.

Family and domain databases

InterProiIPR019372. Lipome_HGMIC_fus_partner-like.
[Graphical view]
PfamiPF10242. L_HMGIC_fpl. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5BJS2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLTCTGV IWALLSFLSA ATSCVGFFMP YWLWGSQLGK PVSFGTFRRC
60 70 80 90 100
SYPVHDESRQ MMVMVEECGR YASFQGIPST EWRICTIVTG LGCGLLLLVA
110 120 130 140 150
LTALMGCCVS ELISRTVGRV AGGIQFLGGL LIGAGCALYP LGWDSEEVRQ
160 170 180 190 200
TCGYISDQFD LGKCEIGWAY YCTGAGAAAA MLLCTWLACF SGKKQKHYPY
Length:200
Mass (Da):21,666
Last modified:April 12, 2005 - v1
Checksum:iB79B0214F15FB3A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091355 mRNA. Translation: AAH91355.1.
RefSeqiNP_001102653.1. NM_001109183.1.
UniGeneiRn.6635.

Genome annotation databases

EnsembliENSRNOT00000019057; ENSRNOP00000019057; ENSRNOG00000014153.
GeneIDi499615.
KEGGirno:499615.
UCSCiRGD:1560177. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091355 mRNA. Translation: AAH91355.1.
RefSeqiNP_001102653.1. NM_001109183.1.
UniGeneiRn.6635.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019057.

Proteomic databases

PaxDbiQ5BJS2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000019057; ENSRNOP00000019057; ENSRNOG00000014153.
GeneIDi499615.
KEGGirno:499615.
UCSCiRGD:1560177. rat.

Organism-specific databases

CTDi10186.
RGDi1560177. Lhfp.

Phylogenomic databases

eggNOGiKOG4026. Eukaryota.
ENOG410XSUB. LUCA.
GeneTreeiENSGT00550000074479.
HOGENOMiHOG000007007.
HOVERGENiHBG080585.
InParanoidiQ5BJS2.
OMAiSTEWRIC.
OrthoDBiEOG7TF7BG.
PhylomeDBiQ5BJS2.
TreeFamiTF321143.

Miscellaneous databases

NextBioi703442.
PROiQ5BJS2.

Gene expression databases

GenevisibleiQ5BJS2. RN.

Family and domain databases

InterProiIPR019372. Lipome_HGMIC_fus_partner-like.
[Graphical view]
PfamiPF10242. L_HMGIC_fpl. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Brain.

Entry informationi

Entry nameiLHFP_RAT
AccessioniPrimary (citable) accession number: Q5BJS2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: April 12, 2005
Last modified: May 11, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.