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Protein

Phytanoyl-CoA dioxygenase domain-containing protein 1

Gene

Phyhd1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Has alpha-ketoglutarate-dependent dioxygenase activity. Does not show detectable activity towards fatty acid CoA thioesters. Is not expected to be active with phytanoyl CoA (By similarity).By similarity

Cofactori

Fe cationBy similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei102Alpha-ketoglutarateBy similarity1
Binding sitei141Alpha-ketoglutarateBy similarity1
Metal bindingi156IronBy similarity1
Metal bindingi158IronBy similarity1
Binding sitei174Alpha-ketoglutarateBy similarity1
Metal bindingi246IronBy similarity1
Binding sitei248Alpha-ketoglutarateBy similarity1
Binding sitei257Alpha-ketoglutarateBy similarity1

GO - Molecular functioni

Keywordsi

Molecular functionDioxygenase, Oxidoreductase
LigandIron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Phytanoyl-CoA dioxygenase domain-containing protein 1 (EC:1.-.-.-)
Gene namesi
Name:Phyhd1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1310377. Phyhd1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003136351 – 291Phytanoyl-CoA dioxygenase domain-containing protein 1Add BLAST291

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei55PhosphothreonineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ5BJP9.
PRIDEiQ5BJP9.

PTM databases

iPTMnetiQ5BJP9.
PhosphoSitePlusiQ5BJP9.

Expressioni

Gene expression databases

BgeeiENSRNOG00000016794.
GenevisibleiQ5BJP9. RN.

Structurei

3D structure databases

ProteinModelPortaliQ5BJP9.
SMRiQ5BJP9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni156 – 158Alpha-ketoglutarate bindingBy similarity3

Sequence similaritiesi

Belongs to the PhyH family. PHYHD1 subfamily.Curated

Phylogenomic databases

eggNOGiKOG3290. Eukaryota.
ENOG410XUSH. LUCA.
GeneTreeiENSGT00390000006287.
HOGENOMiHOG000185005.
HOVERGENiHBG054973.
InParanoidiQ5BJP9.
OMAiYTEPLGR.
OrthoDBiEOG091G0KGX.
PhylomeDBiQ5BJP9.

Family and domain databases

InterProiView protein in InterPro
IPR008775. Phytyl_CoA_dOase.
PfamiView protein in Pfam
PF05721. PhyH. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5BJP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MACLSPSQLK KFQEDGFLLL EGFFTADECV VMQQRIGEIV AEMDVPLHCR
60 70 80 90 100
TEFSTQEDEQ LQTQGNTDYF LSSGDKIRFF FEKGVFDEKG NFLVPPEKSI
110 120 130 140 150
NKIGHALHAH DPVFRSITHS PKVQALVRSL GLQIPVVVQS MYIFKQPHFG
160 170 180 190 200
GEVSPHQDAT FLYTEPLGRV LGLWIATEDA MLENGCLWFI PGSHTSGVSR
210 220 230 240 250
RMIRAPSDSG PGTSFLGSEP AWDNNLFVPL PVRRGGLVLI HGEVVHKSEQ
260 270 280 290
NLSDHSRQAY TFHLMEAAGT VWSPGNWLQP TTELPFPPLY I
Length:291
Mass (Da):32,553
Last modified:April 12, 2005 - v1
Checksum:iB94CF3D88BF696D4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091389 mRNA. Translation: AAH91389.1.
RefSeqiNP_001013099.1. NM_001013081.1.
XP_006233841.1. XM_006233779.2.
XP_006233842.1. XM_006233780.3.
XP_017447138.1. XM_017591649.1.
UniGeneiRn.32623.

Genome annotation databases

EnsembliENSRNOT00000022552; ENSRNOP00000022552; ENSRNOG00000016794.
GeneIDi296621.
KEGGirno:296621.
UCSCiRGD:1310377. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiPHYD1_RAT
AccessioniPrimary (citable) accession number: Q5BJP9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: April 12, 2005
Last modified: July 5, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families