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Protein
Submitted name:

RNA binding motif protein 39

Gene

Rbm39

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding motif protein 39Imported
Submitted name:
RNA-binding protein 39-likeImported
Submitted name:
RNA-binding region (RNP1, RRM) containing 2, isoform CRA_fImported
Gene namesi
Name:Rbm39Imported
Synonyms:LOC100910882Imported, Rnpc2Imported
ORF Names:rCG_37337Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi6496028. LOC100910882.
1310071. Rbm39.

Subcellular locationi

GO - Cellular componenti

Expressioni

Gene expression databases

BgeeiENSRNOG00000019848.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000060273.

Structurei

3D structure databases

SMRiQ5BJP4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini153 – 230RRM (RNA recognition motif)InterPro annotationAdd BLAST78
Domaini250 – 328RRM (RNA recognition motif)InterPro annotationAdd BLAST79

Phylogenomic databases

eggNOGiKOG0147. Eukaryota.
ENOG410XP20. LUCA.
GeneTreeiENSGT00870000136413.
HOGENOMiHOG000236253.
HOVERGENiHBG057646.
KOiK13091.
OMAiNDKFTPE.
OrthoDBiEOG091G0BQ9.
TreeFamiTF320448.

Family and domain databases

InterProiView protein in InterPro
IPR029123. RBM39_linker.
IPR006509. RBM39_SF.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
PfamiView protein in Pfam
PF15519. RBM39linker. 1 hit.
PF00076. RRM_1. 2 hits.
SMARTiView protein in SMART
SM00360. RRM. 3 hits.
SM00361. RRM_1. 2 hits.
SUPFAMiSSF54928. SSF54928. 4 hits.
TIGRFAMsiTIGR01622. SF-CC1. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 2 hits.

Sequencei

Sequence statusi: Complete.

Q5BJP4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADDIDIEAM LEAPYKKDEN KLNSANGHEE RSKKRKKSKS RSRSHERKRS
60 70 80 90 100
KSKERKRSRD RERKKSKSRE RKRSRSKERR RSRSRSRDRR FRGRYRSPYS
110 120 130 140 150
GPKFNSAIRG KIGLPHSIKL SRRRSRSKSP FRKDKSPVRE PIDNLTPEER
160 170 180 190 200
DARTVFCMQL AARIRPRDLE EFFSTVGKVR DVRMISDRNS RRSKGIAYVE
210 220 230 240 250
FVDVSSVPLA IGLTGQRVLG VPIIVQASQA EKNRAAAMAN NLQKGSAGPM
260 270 280 290 300
RLYVGSLHFN ITEDMLRGIF EPFGRIESIQ LMMDSETGRS KGYGFITFSD
310 320 330 340 350
SECAKKALEQ LNGFELAGRP MKVGHVTERT DASSASSFLD SDELERTGID
360 370 380 390 400
LGTTGRLQLM ARLAEGTGLQ IPPAAQQALQ MSGSLAFGAV ADLQTRLSQQ
410 420 430 440 450
TEASALAAAA SVQPLATQCF QLSNMFNPQT EEEVGWDTEI KDDVIEECNK
460 470 480 490 500
HGGVIHIYVD KNSAQGNVYV KCPSIAAAIA AVNALHGRWF AGKMITAAYV
510 520
PLPTYHNLFP DSMTATQLLV PSRR
Length:524
Mass (Da):58,684
Last modified:April 12, 2005 - v1
Checksum:i2843A619B193697B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07054397 Genomic DNA. No translation available.
AC118414 Genomic DNA. No translation available.
BC091394 mRNA. Translation: AAH91394.1.
CH474050 Genomic DNA. Translation: EDL85861.1.
RefSeqiNP_001013225.1. NM_001013207.2.
XP_003749654.1. XM_003749606.4.
XP_017458144.1. XM_017602655.1.
UniGeneiRn.8555.

Genome annotation databases

EnsembliENSRNOT00000026964; ENSRNOP00000026964; ENSRNOG00000019848.
ENSRNOT00000065729; ENSRNOP00000060273; ENSRNOG00000049814.
GeneIDi100910882.
362251.
KEGGirno:362251.
UCSCiRGD:1310071. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ5BJP4_RAT
AccessioniPrimary (citable) accession number: Q5BJP4
Secondary accession number(s): D3ZR20, F1MA64
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2005
Last sequence update: April 12, 2005
Last modified: July 5, 2017
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported