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Protein
Submitted name:

RNA binding motif protein 39

Gene

Rbm39

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding motif protein 39Imported
Submitted name:
RNA-binding protein 39-likeImported
Submitted name:
RNA-binding region (RNP1, RRM) containing 2, isoform CRA_fImported
Gene namesi
Name:Rbm39Imported
Synonyms:LOC100910882Imported, Rnpc2Imported
ORF Names:rCG_37337Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi6496028 LOC100910882
1310071 Rbm39

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000019848

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000060273

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini153 – 230RRMInterPro annotationAdd BLAST78
Domaini250 – 328RRMInterPro annotationAdd BLAST79

Phylogenomic databases

eggNOGiKOG0147 Eukaryota
ENOG410XP20 LUCA
GeneTreeiENSGT00910000144118
HOGENOMiHOG000236253
HOVERGENiHBG057646
KOiK13091
OMAiNDKFTPE
OrthoDBiEOG091G0BQ9
TreeFamiTF320448

Family and domain databases

Gene3Di3.30.70.3303 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR029123 RBM39_linker
IPR006509 RBM39_SF
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF15519 RBM39linker, 1 hit
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 3 hits
SM00361 RRM_1, 2 hits
SUPFAMiSSF54928 SSF54928, 4 hits
TIGRFAMsiTIGR01622 SF-CC1, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

Sequencei

Sequence statusi: Complete.

Q5BJP4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADDIDIEAM LEAPYKKDEN KLNSANGHEE RSKKRKKSKS RSRSHERKRS
60 70 80 90 100
KSKERKRSRD RERKKSKSRE RKRSRSKERR RSRSRSRDRR FRGRYRSPYS
110 120 130 140 150
GPKFNSAIRG KIGLPHSIKL SRRRSRSKSP FRKDKSPVRE PIDNLTPEER
160 170 180 190 200
DARTVFCMQL AARIRPRDLE EFFSTVGKVR DVRMISDRNS RRSKGIAYVE
210 220 230 240 250
FVDVSSVPLA IGLTGQRVLG VPIIVQASQA EKNRAAAMAN NLQKGSAGPM
260 270 280 290 300
RLYVGSLHFN ITEDMLRGIF EPFGRIESIQ LMMDSETGRS KGYGFITFSD
310 320 330 340 350
SECAKKALEQ LNGFELAGRP MKVGHVTERT DASSASSFLD SDELERTGID
360 370 380 390 400
LGTTGRLQLM ARLAEGTGLQ IPPAAQQALQ MSGSLAFGAV ADLQTRLSQQ
410 420 430 440 450
TEASALAAAA SVQPLATQCF QLSNMFNPQT EEEVGWDTEI KDDVIEECNK
460 470 480 490 500
HGGVIHIYVD KNSAQGNVYV KCPSIAAAIA AVNALHGRWF AGKMITAAYV
510 520
PLPTYHNLFP DSMTATQLLV PSRR
Length:524
Mass (Da):58,684
Last modified:April 12, 2005 - v1
Checksum:i2843A619B193697B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07054397 Genomic DNA No translation available.
AC118414 Genomic DNA No translation available.
BC091394 mRNA Translation: AAH91394.1
CH474050 Genomic DNA Translation: EDL85861.1
RefSeqiNP_001013225.1, NM_001013207.2
XP_003749654.1, XM_003749606.4
XP_017458144.1, XM_017602655.1
UniGeneiRn.8555

Genome annotation databases

EnsembliENSRNOT00000026964; ENSRNOP00000026964; ENSRNOG00000019848
ENSRNOT00000065729; ENSRNOP00000060273; ENSRNOG00000049814
GeneIDi100910882
362251
KEGGirno:362251
UCSCiRGD:1310071 rat

Similar proteinsi

Entry informationi

Entry nameiQ5BJP4_RAT
AccessioniPrimary (citable) accession number: Q5BJP4
Secondary accession number(s): D3ZR20, F1MA64
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2005
Last sequence update: April 12, 2005
Last modified: April 25, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported