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Protein
Submitted name:

Afg3l2 protein

Gene

Afg3l2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. metalloendopeptidase activity Source: InterPro

GO - Biological processi

  1. axonogenesis Source: Ensembl
  2. cristae formation Source: Ensembl
  3. death Source: Ensembl
  4. mitochondrial fusion Source: Ensembl
  5. mitochondrial protein processing Source: Ensembl
  6. muscle fiber development Source: Ensembl
  7. myelination Source: Ensembl
  8. nerve development Source: Ensembl
  9. neuromuscular junction development Source: Ensembl
  10. regulation of multicellular organism growth Source: Ensembl
  11. righting reflex Source: Ensembl
Complete GO annotation...

Protein family/group databases

MEROPSiM41.007.

Names & Taxonomyi

Protein namesi
Submitted name:
Afg3l2 proteinImported
Gene namesi
Name:Afg3l2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1305259. Afg3l2.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial inner membrane Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ5BJM6.
PRIDEiQ5BJM6.

Expressioni

Gene expression databases

ExpressionAtlasiQ5BJM6. baseline.
GenevestigatoriQ5BJM6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024632.

Structurei

3D structure databases

ProteinModelPortaliQ5BJM6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0465.
HOGENOMiHOG000217277.
HOVERGENiHBG054965.
PhylomeDBiQ5BJM6.

Family and domain databases

InterProiIPR000642. Peptidase_M41.
[Graphical view]
PfamiPF01434. Peptidase_M41. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5BJM6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MCMTLGGRVS EEIFFGRITT GAQDDLRKVT QSAYAQIVQF GMNEKVGQIS
60 70 80 90 100
FDLPRQGDMV LEKPYSEATA RMIDDEVRIL ISEAYKRTVA LLTEKKADVE
110 120 130 140 150
KVALLLLEKE VLDKNDMVEL LGPRPFTEKS TYEEFVEGTG SLDEDTSLPE
160 170
GLQDWNKERE KEKKEKKEKE EPVNEKVVS
Length:179
Mass (Da):20,383
Last modified:April 12, 2005 - v1
Checksum:i7FCCC8EC49ADA14F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091419 mRNA. Translation: AAH91419.1.
UniGeneiRn.8386.

Genome annotation databases

UCSCiRGD:1305259. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091419 mRNA. Translation: AAH91419.1.
UniGeneiRn.8386.

3D structure databases

ProteinModelPortaliQ5BJM6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024632.

Protein family/group databases

MEROPSiM41.007.

Proteomic databases

PaxDbiQ5BJM6.
PRIDEiQ5BJM6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiRGD:1305259. rat.

Organism-specific databases

RGDi1305259. Afg3l2.

Phylogenomic databases

eggNOGiCOG0465.
HOGENOMiHOG000217277.
HOVERGENiHBG054965.
PhylomeDBiQ5BJM6.

Gene expression databases

ExpressionAtlasiQ5BJM6. baseline.
GenevestigatoriQ5BJM6.

Family and domain databases

InterProiIPR000642. Peptidase_M41.
[Graphical view]
PfamiPF01434. Peptidase_M41. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ5BJM6_RAT
AccessioniPrimary (citable) accession number: Q5BJM6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 12, 2005
Last sequence update: April 12, 2005
Last modified: October 29, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.