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Q5BJM6 (Q5BJM6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Afg3l2 EMBL AAH91419.1 RGD 1305259
OrganismRattus norvegicus (Rat) EMBL AAH91419.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length179 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q5BJM6 [UniParc].

Last modified April 12, 2005. Version 1.
Checksum: 7FCCC8EC49ADA14F

FASTA17920,383
        10         20         30         40         50         60 
MCMTLGGRVS EEIFFGRITT GAQDDLRKVT QSAYAQIVQF GMNEKVGQIS FDLPRQGDMV 

        70         80         90        100        110        120 
LEKPYSEATA RMIDDEVRIL ISEAYKRTVA LLTEKKADVE KVALLLLEKE VLDKNDMVEL 

       130        140        150        160        170 
LGPRPFTEKS TYEEFVEGTG SLDEDTSLPE GLQDWNKERE KEKKEKKEKE EPVNEKVVS 

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References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Spleen EMBL AAH91419.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC091419 mRNA. Translation: AAH91419.1.
UniGeneRn.8386.

3D structure databases

ProteinModelPortalQ5BJM6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000024632.

Protein family/group databases

MEROPSM41.007.

Proteomic databases

PaxDbQ5BJM6.
PRIDEQ5BJM6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1305259. rat.

Organism-specific databases

RGD1305259. Afg3l2.

Phylogenomic databases

eggNOGCOG0465.
HOGENOMHOG000217277.
HOVERGENHBG054965.
InParanoidQ5BJM6.
PhylomeDBQ5BJM6.

Gene expression databases

GenevestigatorQ5BJM6.

Family and domain databases

InterProIPR000642. Peptidase_M41.
[Graphical view]
PfamPF01434. Peptidase_M41. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5BJM6_RAT
AccessionPrimary (citable) accession number: Q5BJM6
Entry history
Integrated into UniProtKB/TrEMBL: April 12, 2005
Last sequence update: April 12, 2005
Last modified: April 16, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)