Q5BJM6 (Q5BJM6_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Afg3l2 protein EMBL AAH91419.1

Gene names

Name:

Afg3l2 EMBL AAH91419.1 RGD 1305259

Organism

Rattus norvegicus (Rat) EMBL AAH91419.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	179 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	axonogenesis Inferred from electronic annotation. Source: Compara cristae formation Inferred from electronic annotation. Source: Compara death Inferred from electronic annotation. Source: Compara mitochondrial fusion Inferred from electronic annotation. Source: Compara mitochondrial protein processing Inferred from electronic annotation. Source: Compara myelination Inferred from electronic annotation. Source: Compara nerve development Inferred from electronic annotation. Source: Compara neuromuscular junction development Inferred from electronic annotation. Source: Compara proteolysis Inferred from electronic annotation. Source: InterPro regulation of multicellular organism growth Inferred from electronic annotation. Source: Compara righting reflex Inferred from electronic annotation. Source: Compara
Cellular_component	mitochondrial inner membrane Inferred from electronic annotation. Source: Compara
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro metalloendopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5BJM6 [UniParc]. Last modified April 12, 2005. Version 1. Checksum: 7FCCC8EC49ADA14F	FASTA	179	20,383
	10 20 30 40 50 60 MCMTLGGRVS EEIFFGRITT GAQDDLRKVT QSAYAQIVQF GMNEKVGQIS FDLPRQGDMV 70 80 90 100 110 120 LEKPYSEATA RMIDDEVRIL ISEAYKRTVA LLTEKKADVE KVALLLLEKE VLDKNDMVEL 130 140 150 160 170 LGPRPFTEKS TYEEFVEGTG SLDEDTSLPE GLQDWNKERE KEKKEKKEKE EPVNEKVVS

References

[1]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Spleen EMBL AAH91419.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC091419 mRNA. Translation: AAH91419.1.
IPI	IPI00192903.
UniGene	Rn.8386.
3D structure databases
ProteinModelPortal	Q5BJM6.
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000024632. Q5BJM6.
Protein family/group databases
MEROPS	M41.007.
Proteomic databases
PaxDb	Q5BJM6.
PRIDE	Q5BJM6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
UCSC	RGD:1305259. rat.
Organism-specific databases
RGD	1305259. Afg3l2.
Phylogenomic databases
eggNOG	COG0465.
HOGENOM	HOG000217277.
HOVERGEN	HBG054965.
InParanoid	Q5BJM6.
OrthoDB	EOG4SBDXC.
Gene expression databases
ArrayExpress	Q5BJM6.
Genevestigator	Q5BJM6.
Family and domain databases
InterPro	IPR000642. Peptidase_M41. [Graphical view]
Pfam	PF01434. Peptidase_M41. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5BJM6_RAT

Accession

Primary (citable) accession number: Q5BJM6

Entry history

Integrated into UniProtKB/TrEMBL:	April 12, 2005
Last sequence update:	April 12, 2005
Last modified:	April 3, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)