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Q5BJI6

- POP5_DANRE

UniProt

Q5BJI6 - POP5_DANRE

Protein

Ribonuclease P/MRP protein subunit POP5

Gene

pop5

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (12 Apr 2005)
      Previous versions | rss
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    Functioni

    Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP By similarity.By similarity

    Catalytic activityi

    Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

    GO - Molecular functioni

    1. ribonuclease P activity Source: UniProtKB-EC

    GO - Biological processi

    1. tRNA processing Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    tRNA processing

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
    Gene namesi
    Name:pop5
    ORF Names:zgc:110616
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 8

    Organism-specific databases

    ZFINiZDB-GENE-050320-123. pop5.

    Subcellular locationi

    Nucleusnucleolus By similarity

    GO - Cellular componenti

    1. nucleolus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 169169Ribonuclease P/MRP protein subunit POP5PRO_0000239009Add
    BLAST

    Expressioni

    Gene expression databases

    BgeeiQ5BJI6.

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiNOG284693.
    GeneTreeiENSGT00390000012331.
    HOGENOMiHOG000293345.
    HOVERGENiHBG082157.
    InParanoidiQ5BJI6.
    KOiK03537.
    OMAiCEVVSDD.
    OrthoDBiEOG7GTT69.
    PhylomeDBiQ5BJI6.
    TreeFamiTF317496.

    Family and domain databases

    InterProiIPR016819. RNase_P/MRP_POP5.
    IPR002759. RNase_P/MRP_subunit.
    [Graphical view]
    PfamiPF01900. RNase_P_Rpp14. 1 hit.
    [Graphical view]
    PIRSFiPIRSF023803. Ribonuclease_P_prd. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q5BJI6-1 [UniParc]FASTAAdd to Basket

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    MVRFKSRYLL CELCVSEPSS LHLFEDKVVY QALRGAVNRA HGDYGAAIFN    50
    ITLGVLVKYL NAHTGVVLIR CRKAHYRLVW SSLPFITFLE NRGQKVRCFF 100
    NCIHVGGTIR TSQKFLIKYN RQQLQRMLLD CKTDAEKQDV RKAILSCSLN 150
    LIKGEETDGS DDDGDEEDT 169
    Length:169
    Mass (Da):19,306
    Last modified:April 12, 2005 - v1
    Checksum:iE0C78539E13B9880
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC091467 mRNA. Translation: AAH91467.1.
    RefSeqiNP_001013566.1. NM_001013548.1.
    UniGeneiDr.39115.

    Genome annotation databases

    EnsembliENSDART00000075491; ENSDARP00000069973; ENSDARG00000053452.
    GeneIDi541421.
    KEGGidre:541421.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC091467 mRNA. Translation: AAH91467.1 .
    RefSeqi NP_001013566.1. NM_001013548.1.
    UniGenei Dr.39115.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000075491 ; ENSDARP00000069973 ; ENSDARG00000053452 .
    GeneIDi 541421.
    KEGGi dre:541421.

    Organism-specific databases

    CTDi 51367.
    ZFINi ZDB-GENE-050320-123. pop5.

    Phylogenomic databases

    eggNOGi NOG284693.
    GeneTreei ENSGT00390000012331.
    HOGENOMi HOG000293345.
    HOVERGENi HBG082157.
    InParanoidi Q5BJI6.
    KOi K03537.
    OMAi CEVVSDD.
    OrthoDBi EOG7GTT69.
    PhylomeDBi Q5BJI6.
    TreeFami TF317496.

    Miscellaneous databases

    NextBioi 20879231.
    PROi Q5BJI6.

    Gene expression databases

    Bgeei Q5BJI6.

    Family and domain databases

    InterProi IPR016819. RNase_P/MRP_POP5.
    IPR002759. RNase_P/MRP_subunit.
    [Graphical view ]
    Pfami PF01900. RNase_P_Rpp14. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF023803. Ribonuclease_P_prd. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Embryo.

    Entry informationi

    Entry nameiPOP5_DANRE
    AccessioniPrimary (citable) accession number: Q5BJI6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2006
    Last sequence update: April 12, 2005
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3