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Protein

Ribonuclease P/MRP protein subunit POP5

Gene

pop5

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP (By similarity).By similarity

Catalytic activityi

Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

tRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
Gene namesi
Name:pop5
ORF Names:zgc:110616
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 8

Organism-specific databases

ZFINiZDB-GENE-050320-123. pop5.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 169169Ribonuclease P/MRP protein subunit POP5PRO_0000239009Add
BLAST

Expressioni

Gene expression databases

BgeeiQ5BJI6.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000069973.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG284693.
GeneTreeiENSGT00390000012331.
HOGENOMiHOG000293345.
HOVERGENiHBG082157.
InParanoidiQ5BJI6.
KOiK03537.
OMAiCEVVSDD.
OrthoDBiEOG7GTT69.
PhylomeDBiQ5BJI6.
TreeFamiTF317496.

Family and domain databases

InterProiIPR016819. RNase_P/MRP_POP5.
IPR002759. RNase_P/MRP_subunit.
[Graphical view]
PANTHERiPTHR13004:SF8. PTHR13004:SF8. 1 hit.
PfamiPF01900. RNase_P_Rpp14. 1 hit.
[Graphical view]
PIRSFiPIRSF023803. Ribonuclease_P_prd. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5BJI6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRFKSRYLL CELCVSEPSS LHLFEDKVVY QALRGAVNRA HGDYGAAIFN
60 70 80 90 100
ITLGVLVKYL NAHTGVVLIR CRKAHYRLVW SSLPFITFLE NRGQKVRCFF
110 120 130 140 150
NCIHVGGTIR TSQKFLIKYN RQQLQRMLLD CKTDAEKQDV RKAILSCSLN
160
LIKGEETDGS DDDGDEEDT
Length:169
Mass (Da):19,306
Last modified:April 12, 2005 - v1
Checksum:iE0C78539E13B9880
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091467 mRNA. Translation: AAH91467.1.
RefSeqiNP_001013566.1. NM_001013548.1.
UniGeneiDr.39115.

Genome annotation databases

EnsembliENSDART00000075491; ENSDARP00000069973; ENSDARG00000053452.
GeneIDi541421.
KEGGidre:541421.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC091467 mRNA. Translation: AAH91467.1.
RefSeqiNP_001013566.1. NM_001013548.1.
UniGeneiDr.39115.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000069973.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000075491; ENSDARP00000069973; ENSDARG00000053452.
GeneIDi541421.
KEGGidre:541421.

Organism-specific databases

CTDi51367.
ZFINiZDB-GENE-050320-123. pop5.

Phylogenomic databases

eggNOGiNOG284693.
GeneTreeiENSGT00390000012331.
HOGENOMiHOG000293345.
HOVERGENiHBG082157.
InParanoidiQ5BJI6.
KOiK03537.
OMAiCEVVSDD.
OrthoDBiEOG7GTT69.
PhylomeDBiQ5BJI6.
TreeFamiTF317496.

Miscellaneous databases

NextBioi20879231.
PROiQ5BJI6.

Gene expression databases

BgeeiQ5BJI6.

Family and domain databases

InterProiIPR016819. RNase_P/MRP_POP5.
IPR002759. RNase_P/MRP_subunit.
[Graphical view]
PANTHERiPTHR13004:SF8. PTHR13004:SF8. 1 hit.
PfamiPF01900. RNase_P_Rpp14. 1 hit.
[Graphical view]
PIRSFiPIRSF023803. Ribonuclease_P_prd. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Embryo.

Entry informationi

Entry nameiPOP5_DANRE
AccessioniPrimary (citable) accession number: Q5BJI6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: April 12, 2005
Last modified: June 24, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.