DNA ligase - Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

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Q5B061 (Q5B061_EMENI) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 63. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

ORF Names:

AN6069.2 EMBL EAA58044.1

Organism

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) EMBL EAA58044.1

Taxonomic identifier

227321 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Pezizomycotina › Eurotiomycetes › Eurotiomycetidae › Eurotiales › Trichocomaceae › Emericella ›

Protein attributes

Sequence length	886 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW lagging strand elongation Inferred from Biological aspect of Ancestor. Source: RefGenome nucleotide-excision repair Inferred from Biological aspect of Ancestor. Source: RefGenome
Cellular_component	chromosome Inferred from Biological aspect of Ancestor. Source: RefGenome mitochondrion Inferred from Biological aspect of Ancestor. Source: RefGenome nucleus Inferred from Biological aspect of Ancestor. Source: RefGenome
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from Biological aspect of Ancestor. Source: RefGenome
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q5B061 [UniParc].

Last modified April 26, 2005. Version 1.
Checksum: ECFC100F297606E0
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FASTA

886

97,263

        10         20         30         40         50         60 
MPDPKEGKQA TLGYVKDRQS TLGRFFGSNT NAPKKQTILS FGGNRSKSTS ASRPNREPSS 

        70         80         90        100        110        120 
LNGNTKNASA VTRGDDVNTG DAFEVKPEMR AGADQNPLKR DKSEDVSDSD ESEKVQPSNK 

       130        140        150        160        170        180 
RRRKSSGKTP AKPQIDSSPE STKGRKSQVK EPTPEIVVKA SGEETPEDPD VSEAEEEGLS 

       190        200        210        220        230        240 
ASEDETDKKP ELKKKEIEKV QATIKGSGND PYPDWQPGEP VPYAALCTTF SLIEMTTKRL 

       250        260        270        280        290        300 
QILAHCSLFL RQVLRLTPQD FLPTVQLMIN KLAADYAGIE LGIGESLIMK AIGESTGRSL 

       310        320        330        340        350        360 
AVIKADQHEI GDLGLVAAKS RSNQPTMFKP KALTVRGVHE GLLNIAKVQG HGAQDKKISG 

       370        380        390        400        410        420 
IKKLLSAADA ATTGKGSKGI DITKNKGGPS EAKYIVRFLE GKLRLGLAEK TVLVALAQAV 

       430        440        450        460        470        480 
VSHEAALKGK KAPSAEELAE GEAILKTVYS ELPAYEVIIP ALLEHGLSNL REHCKLQPGI 

       490        500        510        520        530        540 
PIKPMLAKPT KSITEVLDRF EGKDFTCEYK YDGERAQIHY VAPDETKNYP GAQLTLKESA 

       550        560        570        580        590        600 
GLSAIFSRNS EDLSKKYPDV LAKLSTWIKP GVKSFVLDCE TVAWDVEAKK VLPFQQLMTR 

       610        620        630        640        650        660 
KRKDVKAEDV KVKVCVFAFD LLFLNGEPTV KKPLRQRRDL LHSSFQPIEG EFQFAQYGNT 

       670        680        690        700        710        720 
NDLEQIQTLL DDSVKASCEG LMVKMLDTEE SGYEPSKRSR NWLKVKKDYL AGVGDSLDLL 

       730        740        750        760        770        780 
VLGAYYGRGK RTSVYGAFLL AAYNSNSQTY ETICNIGTGF SEAMLDELHT TLSPLVIDRP 

       790        800        810        820        830        840 
KPFYSHSTVP KDQPDVWLEP RYVWEVKTAD LTLSPRYKAA ADEFVGTTGG GGKGVSLRFP 

       850        860        870        880 
RFIKVRDDKK PEQATTTRAV AEMYRKQEAV AKEGSGKGGV DDDFEY

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References

[1]

"Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae."
Galagan J.E., Calvo S.E., Cuomo C., Ma L.-J., Wortman J.R., Batzoglou S., Lee S.-I., Bastuerkmen M., Spevak C.C., Clutterbuck J., Kapitonov V., Jurka J., Scazzocchio C., Farman M.L., Butler J., Purcell S., Harris S., Braus G.H.

Birren B.W.
Nature 438:1105-1115(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AACD01000104 Genomic DNA. Translation: EAA58044.1.
RefSeq	XP_663673.1. XM_658581.1.
3D structure databases
ProteinModelPortal	Q5B061.
ModBase	Search...
Protein-protein interaction databases
STRING	162425.CADANIAP00006948.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2871154.
KEGG	ani:AN6069.2.
Phylogenomic databases
eggNOG	COG1793.
KO	K10747.
OrthoDB	EOG4RV60K.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5B061_EMENI

Accession

Primary (citable) accession number: Q5B061

Entry history

Integrated into UniProtKB/TrEMBL:	April 26, 2005
Last sequence update:	April 26, 2005
Last modified:	April 3, 2013
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry information