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Reviewed, UniProtKB/Swiss-Prot Q5AED9 (BBP_CANAL)

Last modified November 24, 2009. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Branchpoint-bridging protein
Gene names
Name: BBP
Synonyms: MSL5
ORF Names: CaO19.329, CaO19.7961
OrganismCandida albicans (Yeast)
Taxonomic identifier5476 [NCBI]
Taxonomic lineageEukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › mitosporic Saccharomycetales › Candida

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Protein attributes

Sequence length455 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

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General annotation (Comments)

Function

Necessary for the splicing of pre-mRNA. Has a role in the recognition of the branch site (5'-UACUAAC-3'), the pyrimidine tract and the 3'-splice site at the 3'-end of introns By similarity.

Subcellular location

Nucleus By similarity.

Sequence similarities

Belongs to the BBP/SF1 family.

Contains 1 CCHC-type zinc finger.

Contains 1 KH domain.

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Ontologies

Keywords
   Biological processmRNA processing
mRNA splicing
   Cellular componentNucleus
Spliceosome
   DomainZinc-finger
   LigandMetal-binding
RNA-binding
Zinc
Gene Ontology (GO)
   Biological processRNA splicing

Inferred from electronic annotation. Source: UniProtKB-KW

mRNA processing

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentspliceosomal complex

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

zinc ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 455455Branchpoint-bridging protein
PRO_0000256145

Regions

Domain153 – 23684KH
Zinc finger292 – 30918CCHC-type
Compositional bias283 – 2864Poly-Gln
Compositional bias336 – 40166Pro-rich
Compositional bias435 – 4406Poly-Ser
Compositional bias443 – 4497Poly-Pro

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Sequences

Sequence LengthMass (Da)Tools
Q5AED9-1 [UniParc].

Last modified April 26, 2005. Version 1.
Checksum: 6905857724197F1B

FASTA45550,078
        10         20         30         40         50         60 
MSNRGRQPSG PPPSRKRETK WSGKPKRYAN FGAQSFDTVI TGHLTQEQLD AYQRYFRIEE 

        70         80         90        100        110        120 
ISNFLSVAKQ QHKSIVDVLP SAKVDETDHY KRDPSPPPKY DKNGNRTNTR ERRVTEALEK 

       130        140        150        160        170        180 
ERHELVELAA SSIKNYMIPS NYRRPSRTVE RLYVPVKDYP DINFVGFLIG PRGNTLKKLQ 

       190        200        210        220        230        240 
EDSGARLQIR GKGSVKEGKS SDGFGSSQTG TDIQDDLHVL ITADSPLKIS KAVKLVNEII 

       250        260        270        280        290        300 
DKLIFSPQGM NFMKRDQLKE LAVLNGTLRE TKPFDPEAHE KKQQQQMDIT KIVCKICGNI 

       310        320        330        340        350        360 
GHIARDCKQN NGKRPLDDNA ENEPTTINKK ARTDVPPPPP PPPPPAPPSS STEISKQVPP 

       370        380        390        400        410        420 
PPPPPPPPAP SAAASGFATT ENYKQGLVPP PPPPPPPPPP PVRSALVNFE NNSKVLLTKE 

       430        440        450 
KEESGSSELK NTGESSSSSS GVPPSPPPPS SNVPR

« Hide

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References

[1]"The diploid genome sequence of Candida albicans."
Jones T., Federspiel N.A., Chibana H., Dungan J., Kalman S., Magee B.B., Newport G., Thorstenson Y.R., Agabian N., Magee P.T., Davis R.W., Scherer S.
Proc. Natl. Acad. Sci. U.S.A. 101:7329-7334(2004) [PubMed: 15123810] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SC5314.

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Cross-references

Sequence databases

AACQ01000027 Genomic DNA. Translation: EAL01168.1.
AACQ01000026 Genomic DNA. Translation: EAL01304.1.
RefSeqXP_720024.1.
XP_720156.1.

3D structure databases

HSSPHSSP built from PDB template 1K1G based on UniProtKB Q9BW01.
ModBaseSearch...

Genome annotation databases

GeneID3638211.
3638361.
KEGGcal:CaO19.329.
cal:CaO19.7961.

Organism-specific databases

CGDCAL0004717. orf19.329.

Phylogenomic databases

OrthoDBEOG97WQ4V

Family and domain databases

InterProIPR004087. KH.
IPR004088. KH_type_1.
IPR018111. KH_type_1_subgr.
IPR001878. Znf_CCHC.
[Graphical view]
PfamPF00013. KH_1. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTSM00322. KH. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
[Graphical view]
PROSITEPS50084. KH_TYPE_1. 1 hit.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameBBP_CANAL
AccessionPrimary (citable) accession number: Q5AED9
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: April 26, 2005
Last modified: November 24, 2009
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectFPAP (Fungal Proteome Annotation Project)

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Relevant documents

Candida albicans

Candida albicans: entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents