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Q59P50

- YSH1_CANAL

UniProt

Q59P50 - YSH1_CANAL

Protein

Endoribonuclease YSH1

Gene

YSH1

Organism
Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (26 Apr 2005)
      Previous versions | rss
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    Functioni

    Component of the cleavage factor I (CF I) involved in pre-mRNA 3'-end processing.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi159 – 1591Zinc 1By similarity
    Metal bindingi161 – 1611Zinc 1By similarity
    Metal bindingi163 – 1631Zinc 2By similarity
    Metal bindingi164 – 1641Zinc 2By similarity
    Metal bindingi256 – 2561Zinc 1By similarity
    Metal bindingi277 – 2771Zinc 1By similarity
    Metal bindingi277 – 2771Zinc 2By similarity
    Active sitei499 – 4991Proton donorSequence Analysis
    Metal bindingi521 – 5211Zinc 2By similarity

    GO - Molecular functioni

    1. endonuclease activity Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. mRNA processing Source: UniProtKB-KW
    2. response to drug Source: CGD

    Keywords - Molecular functioni

    Endonuclease, Hydrolase, Nuclease

    Keywords - Biological processi

    mRNA processing

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoribonuclease YSH1 (EC:3.1.27.-)
    Alternative name(s):
    mRNA 3'-end-processing protein YSH1
    Gene namesi
    Name:YSH1
    ORF Names:CaO19.12941, CaO19.5486
    OrganismiCandida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
    Taxonomic identifieri237561 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesmitosporic SaccharomycetalesCandida
    ProteomesiUP000000559: Unassembled WGS sequence

    Organism-specific databases

    CGDiCAL0005344. orf19.5486.

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 870870Endoribonuclease YSH1PRO_0000238898Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi5476.CAL0005344.

    Structurei

    3D structure databases

    ProteinModelPortaliQ59P50.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi212 – 2176Poly-Gly

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1236.
    KOiK14403.
    OrthoDBiEOG7TN01H.

    Family and domain databases

    Gene3Di3.60.15.10. 2 hits.
    InterProiIPR001279. Beta-lactamas-like.
    IPR022712. Beta_Casp.
    IPR021718. CPSF73-100_C.
    IPR011108. RMMBL.
    [Graphical view]
    PfamiPF10996. Beta-Casp. 1 hit.
    PF11718. CPSF73-100_C. 1 hit.
    PF00753. Lactamase_B. 1 hit.
    PF07521. RMMBL. 1 hit.
    [Graphical view]
    SMARTiSM01027. Beta-Casp. 1 hit.
    SM01098. CPSF73-100_C. 1 hit.
    SM00849. Lactamase_B. 1 hit.
    [Graphical view]
    SUPFAMiSSF56281. SSF56281. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q59P50-1 [UniParc]FASTAAdd to Basket

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    MCIQPDSLED AYKIPRPVHR EEFTQLSPSF FQTATFQLEK TNEKNNIEEP    50
    KKNKAFLNSK IIYKDLFEIR KLSNNFVNTS HPTCTETMNE QNEFSDEENF 100
    KFFGLGGCNE VGRSCHIIEY KNKVIMLDSG MHPALSGHAS FPYFDEYDIS 150
    KVDILLISHF HVDHSASLPY VMQQSNFRGK VFMTHATKAI YRWLMQDFVR 200
    VTSIGNSRSE DGGGGEGSNL YTDDDIMKSF DRIETIDYHS TMEIDGIRFT 250
    AYHAGHVLGA CMYFIEIGGL KVLFTGDYSR EENRHLHAAE VPPLKPDILI 300
    SESTFGTGTL EPRIELERKL TTHIHATIAK GGRVLLPVFA LGNAQELLLI 350
    LDEYWSQNED LQNVNVFYAS NLAKKCMAVY ETYTGIMNDK IRLSSASSEK 400
    SNPFDFKYIK SIKDLSKFQD MGPSVVVATP GMLQAGVSRQ LLEKWAPDGK 450
    NLVILTGYSV EGTMAKELLK EPTMIQSATN PDMTIPRRIG IEEISFAAHV 500
    DFQQNSEFIE KVSPSKVILV HGDSVPMGRL KSALLSKYAS RKGTDQEVKV 550
    YNPKNCEELI IGFKGLKIAK VLGSLAEEQL QVLKKIIQDE VSAENSKITE 600
    LTEEKEEADE IKEDNGETDT TQKPNESSIN VLKTGQVVSG VLVSKDFNLN 650
    LLQLQDLHEF TQLSTSIVKS KMHLKINADI SLMVWHLEQM FGYINVINDD 700
    DEEWECVIMD VVDVFIDRSK GPGLFITVEW INDNLMADSL ADSVIAILYS 750
    IDSSPASVKL SSQNHNHGDN HIVKKEDSME IDRPVEAHAK TDIKSRIERI 800
    ALLLKAQFGD SLKELPEEKA IIQIGKTVAN VDYKRLEVEC SSKVLKDRVE 850
    NVIKRGCQLT APLSQNPKIA 870
    Length:870
    Mass (Da):97,899
    Last modified:April 26, 2005 - v1
    Checksum:iD403C2942B7B87B7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AACQ01000196 Genomic DNA. Translation: EAK92250.1.
    AACQ01000195 Genomic DNA. Translation: EAK92275.1.
    RefSeqiXP_711478.1. XM_706386.1.
    XP_711502.1. XM_706410.1.

    Genome annotation databases

    GeneIDi3646887.
    3646911.
    KEGGical:CaO19.12941.
    cal:CaO19.5486.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AACQ01000196 Genomic DNA. Translation: EAK92250.1 .
    AACQ01000195 Genomic DNA. Translation: EAK92275.1 .
    RefSeqi XP_711478.1. XM_706386.1.
    XP_711502.1. XM_706410.1.

    3D structure databases

    ProteinModelPortali Q59P50.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 5476.CAL0005344.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 3646887.
    3646911.
    KEGGi cal:CaO19.12941.
    cal:CaO19.5486.

    Organism-specific databases

    CGDi CAL0005344. orf19.5486.

    Phylogenomic databases

    eggNOGi COG1236.
    KOi K14403.
    OrthoDBi EOG7TN01H.

    Family and domain databases

    Gene3Di 3.60.15.10. 2 hits.
    InterProi IPR001279. Beta-lactamas-like.
    IPR022712. Beta_Casp.
    IPR021718. CPSF73-100_C.
    IPR011108. RMMBL.
    [Graphical view ]
    Pfami PF10996. Beta-Casp. 1 hit.
    PF11718. CPSF73-100_C. 1 hit.
    PF00753. Lactamase_B. 1 hit.
    PF07521. RMMBL. 1 hit.
    [Graphical view ]
    SMARTi SM01027. Beta-Casp. 1 hit.
    SM01098. CPSF73-100_C. 1 hit.
    SM00849. Lactamase_B. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56281. SSF56281. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SC5314 / ATCC MYA-2876.

    Entry informationi

    Entry nameiYSH1_CANAL
    AccessioniPrimary (citable) accession number: Q59P50
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2006
    Last sequence update: April 26, 2005
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programFungal Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Candida albicans
      Candida albicans: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3