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Protein

Endoribonuclease YSH1

Gene

YSH1

Organism
Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Component of the cleavage factor I (CF I) involved in pre-mRNA 3'-end processing.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi159 – 1591Zinc 1By similarity
Metal bindingi161 – 1611Zinc 1By similarity
Metal bindingi163 – 1631Zinc 2By similarity
Metal bindingi164 – 1641Zinc 2By similarity
Metal bindingi256 – 2561Zinc 1By similarity
Metal bindingi277 – 2771Zinc 1By similarity
Metal bindingi277 – 2771Zinc 2By similarity
Active sitei499 – 4991Proton donorSequence Analysis
Metal bindingi521 – 5211Zinc 2By similarity

GO - Molecular functioni

GO - Biological processi

  • mRNA processing Source: UniProtKB-KW
  • response to drug Source: CGD
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

mRNA processing

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YSH1 (EC:3.1.27.-)
Alternative name(s):
mRNA 3'-end-processing protein YSH1
Gene namesi
Name:YSH1
ORF Names:CaO19.12941, CaO19.5486
OrganismiCandida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
Taxonomic identifieri237561 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesDebaryomycetaceaeCandida/Lodderomyces cladeCandida
ProteomesiUP000000559 Componenti: Unassembled WGS sequence

Organism-specific databases

CGDiCAL0005344. orf19.5486.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 870870Endoribonuclease YSH1PRO_0000238898Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ59P50.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi212 – 2176Poly-Gly

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1236.
InParanoidiQ59P50.
KOiK14403.
OrthoDBiEOG7TN01H.

Family and domain databases

Gene3Di3.60.15.10. 2 hits.
InterProiIPR001279. Beta-lactamas-like.
IPR022712. Beta_Casp.
IPR021718. CPSF73-100_C.
IPR011108. RMMBL.
[Graphical view]
PfamiPF10996. Beta-Casp. 1 hit.
PF11718. CPSF73-100_C. 1 hit.
PF00753. Lactamase_B. 1 hit.
PF07521. RMMBL. 1 hit.
[Graphical view]
SMARTiSM01027. Beta-Casp. 1 hit.
SM01098. CPSF73-100_C. 1 hit.
SM00849. Lactamase_B. 1 hit.
[Graphical view]
SUPFAMiSSF56281. SSF56281. 1 hit.

Sequencei

Sequence statusi: Complete.

Q59P50-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCIQPDSLED AYKIPRPVHR EEFTQLSPSF FQTATFQLEK TNEKNNIEEP
60 70 80 90 100
KKNKAFLNSK IIYKDLFEIR KLSNNFVNTS HPTCTETMNE QNEFSDEENF
110 120 130 140 150
KFFGLGGCNE VGRSCHIIEY KNKVIMLDSG MHPALSGHAS FPYFDEYDIS
160 170 180 190 200
KVDILLISHF HVDHSASLPY VMQQSNFRGK VFMTHATKAI YRWLMQDFVR
210 220 230 240 250
VTSIGNSRSE DGGGGEGSNL YTDDDIMKSF DRIETIDYHS TMEIDGIRFT
260 270 280 290 300
AYHAGHVLGA CMYFIEIGGL KVLFTGDYSR EENRHLHAAE VPPLKPDILI
310 320 330 340 350
SESTFGTGTL EPRIELERKL TTHIHATIAK GGRVLLPVFA LGNAQELLLI
360 370 380 390 400
LDEYWSQNED LQNVNVFYAS NLAKKCMAVY ETYTGIMNDK IRLSSASSEK
410 420 430 440 450
SNPFDFKYIK SIKDLSKFQD MGPSVVVATP GMLQAGVSRQ LLEKWAPDGK
460 470 480 490 500
NLVILTGYSV EGTMAKELLK EPTMIQSATN PDMTIPRRIG IEEISFAAHV
510 520 530 540 550
DFQQNSEFIE KVSPSKVILV HGDSVPMGRL KSALLSKYAS RKGTDQEVKV
560 570 580 590 600
YNPKNCEELI IGFKGLKIAK VLGSLAEEQL QVLKKIIQDE VSAENSKITE
610 620 630 640 650
LTEEKEEADE IKEDNGETDT TQKPNESSIN VLKTGQVVSG VLVSKDFNLN
660 670 680 690 700
LLQLQDLHEF TQLSTSIVKS KMHLKINADI SLMVWHLEQM FGYINVINDD
710 720 730 740 750
DEEWECVIMD VVDVFIDRSK GPGLFITVEW INDNLMADSL ADSVIAILYS
760 770 780 790 800
IDSSPASVKL SSQNHNHGDN HIVKKEDSME IDRPVEAHAK TDIKSRIERI
810 820 830 840 850
ALLLKAQFGD SLKELPEEKA IIQIGKTVAN VDYKRLEVEC SSKVLKDRVE
860 870
NVIKRGCQLT APLSQNPKIA
Length:870
Mass (Da):97,899
Last modified:April 26, 2005 - v1
Checksum:iD403C2942B7B87B7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACQ01000196 Genomic DNA. Translation: EAK92250.1.
AACQ01000195 Genomic DNA. Translation: EAK92275.1.
RefSeqiXP_711478.1. XM_706386.1.
XP_711502.1. XM_706410.1.

Genome annotation databases

GeneIDi3646887.
3646911.
KEGGical:CaO19.12941.
cal:CaO19.5486.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACQ01000196 Genomic DNA. Translation: EAK92250.1.
AACQ01000195 Genomic DNA. Translation: EAK92275.1.
RefSeqiXP_711478.1. XM_706386.1.
XP_711502.1. XM_706410.1.

3D structure databases

ProteinModelPortaliQ59P50.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi3646887.
3646911.
KEGGical:CaO19.12941.
cal:CaO19.5486.

Organism-specific databases

CGDiCAL0005344. orf19.5486.

Phylogenomic databases

eggNOGiCOG1236.
InParanoidiQ59P50.
KOiK14403.
OrthoDBiEOG7TN01H.

Family and domain databases

Gene3Di3.60.15.10. 2 hits.
InterProiIPR001279. Beta-lactamas-like.
IPR022712. Beta_Casp.
IPR021718. CPSF73-100_C.
IPR011108. RMMBL.
[Graphical view]
PfamiPF10996. Beta-Casp. 1 hit.
PF11718. CPSF73-100_C. 1 hit.
PF00753. Lactamase_B. 1 hit.
PF07521. RMMBL. 1 hit.
[Graphical view]
SMARTiSM01027. Beta-Casp. 1 hit.
SM01098. CPSF73-100_C. 1 hit.
SM00849. Lactamase_B. 1 hit.
[Graphical view]
SUPFAMiSSF56281. SSF56281. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SC5314 / ATCC MYA-2876.

Entry informationi

Entry nameiYSH1_CANAL
AccessioniPrimary (citable) accession number: Q59P50
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: April 26, 2005
Last modified: June 24, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Candida albicans
    Candida albicans: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.