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Protein
Submitted name:

Synaptotagmin binding, cytoplasmic RNA interacting protein variant

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Synaptotagmin binding, cytoplasmic RNA interacting protein variantImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134985065.

PTM / Processingi

Proteomic databases

PaxDbiQ59GL1.
PeptideAtlasiQ59GL1.
PRIDEiQ59GL1.

Expressioni

Gene expression databases

GenevisibleiQ59GL1. HS.

Interactioni

Protein-protein interaction databases

IntActiQ59GL1. 1 interaction.
STRINGi9606.ENSP00000358635.

Structurei

3D structure databases

ProteinModelPortaliQ59GL1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini134 – 21380RRM (RNA recognition motif)InterPro annotationAdd
BLAST
Domaini215 – 29783RRM (RNA recognition motif)InterPro annotationAdd
BLAST
Domaini310 – 38071RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0117. Eukaryota.
ENOG410XTJ5. LUCA.
HOGENOMiHOG000186082.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR006535. HnRNP_R/Q_splicing_fac.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01648. hnRNP-R-Q. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q59GL1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
STRFPQPDTI GQDFSASAQR GGLVAHSDLD ERAIEALKEF NEDGALAVLQ
60 70 80 90 100
QFKDSDLSHV QNKSAFLCGV MKTYRQREKQ GTKVADSSKG PDEAKIKALL
110 120 130 140 150
ERTGYTLDVT TGQRKYGGPP PDSVYSGQQP SVGTEIFVGK IPRDLFEDEL
160 170 180 190 200
VPLFEKAGPI WDLRLMMDPL TGLNRGYAFV TFCTKEAAQE AVKLYNNHEI
210 220 230 240 250
RSGKHIGVCI SVANNRLFVG SIPKSKTKEQ ILEEFSKVTE GLTDVILYHQ
260 270 280 290 300
PDDKKKNRGF CFLEYEDHKT AAQARRRLMS GKVKVWGNVG TVEWADPIED
310 320 330 340 350
PDPEVMAKVK VLFVRNLANT VTEEILEKAF SQFGKLERVK KLKDYAFIHF
360 370 380 390 400
DERDGAVKAM EEMNGKDLEG ENIEIVFAKP PDQKRKERKA QRQAAKNQMY
410 420 430 440 450
DDYYYYGPPH MPPPTRGRGR GGRGGYGYPP DYYGYEDYYD YYGYDYHNYR
460 470 480 490 500
GGYEDPYYGY EDFQVGARGR GGRGARGAAP SRGRGAAPPR GRAGYSQRGG
510 520 530
PGSARGVRGA RGGAQQQRGR GQGKGVEAGP DLLQ
Length:534
Mass (Da):59,607
Last modified:April 26, 2005 - v1
Checksum:iC28D2DF7FAA02300
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB209098 mRNA. Translation: BAD92335.1.
RefSeqiNP_001153145.1. NM_001159673.1.
NP_001153146.1. NM_001159674.1.
NP_001153148.1. NM_001159676.1.
NP_001153149.1. NM_001159677.1.
NP_001240700.1. NM_001253771.1.
UniGeneiHs.571177.

Genome annotation databases

GeneIDi10492.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB209098 mRNA. Translation: BAD92335.1.
RefSeqiNP_001153145.1. NM_001159673.1.
NP_001153146.1. NM_001159674.1.
NP_001153148.1. NM_001159676.1.
NP_001153149.1. NM_001159677.1.
NP_001240700.1. NM_001253771.1.
UniGeneiHs.571177.

3D structure databases

ProteinModelPortaliQ59GL1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ59GL1. 1 interaction.
STRINGi9606.ENSP00000358635.

Proteomic databases

PaxDbiQ59GL1.
PeptideAtlasiQ59GL1.
PRIDEiQ59GL1.

Protocols and materials databases

DNASUi10492.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi10492.

Organism-specific databases

CTDi10492.
PharmGKBiPA134985065.

Phylogenomic databases

eggNOGiKOG0117. Eukaryota.
ENOG410XTJ5. LUCA.
HOGENOMiHOG000186082.

Miscellaneous databases

GenomeRNAii10492.

Gene expression databases

GenevisibleiQ59GL1. HS.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR006535. HnRNP_R/Q_splicing_fac.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01648. hnRNP-R-Q. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ59GL1_HUMAN
AccessioniPrimary (citable) accession number: Q59GL1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 26, 2005
Last sequence update: April 26, 2005
Last modified: September 7, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.