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Protein
Submitted name:

Alpha 1 type VII collagen variant

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha 1 type VII collagen variantImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA26730.

PTM / Processingi

Proteomic databases

PaxDbiQ59F16.
PRIDEiQ59F16.

Expressioni

Gene expression databases

GenevisibleiQ59F16. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000332371.

Family & Domainsi

Keywords - Domaini

CollagenImported

Phylogenomic databases

eggNOGiKOG3544. Eukaryota.
ENOG410XNMM. LUCA.
HOVERGENiHBG004933.
KOiK16628.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q59F16-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
GLPGRKGDPG PSGPPGPRGP LGDPGPRGPP GLPGTAMKGD KGDRGERGPP
60 70 80 90 100
GPGEGGIAPG EPGLPGLPGS PGPQGPVGPP GKKGEKGDSE DGAPGLPGQP
110 120 130 140 150
GSPGEQGPRG PPGAIGPKGD RGFPGPLGEA GEKGERGPPG PAGSRGLPGV
160 170 180 190 200
AGRPGAKGPE GPPGPTGRQG EKGEPGRPGD PAVVGPAVAG PKGEKGDVGP
210 220 230 240 250
AGPRGATGVQ GERGPPGLVL PGDPGPKGDP GDRGPIGLTG RAGPPGDSGP
260 270 280 290 300
PGEKGDPGRP GPPGPVGPRG RDGEVGEKGD EGPPGDPGLP GKAGERGLRG
310 320 330 340 350
APGVRGPVGE KGDQGDPGED GRNGSPGSSG PKGDRGEPGP PGPPGRLVDT
360 370 380 390 400
GPGAREKGEP GDRGQEGPRG PKGDPGLPGA PGERGIEGFR GPPGPQGDPG
410 420 430 440 450
VRGPAGEKGD RGPPGLDGRS GLDGKPGAAG PSGPNGAAGK AGDPGRDGLP
460 470 480 490 500
GLRGEQGLPG PSGPPGLPGK PGEDGKPGLN GKNGEPGDPG EDGRKGEKGD
510 520 530 540 550
SGASGREGRD GPKGERGAPG ILGPQGPPGL PGPVGPPGQG FPGVPGGTGP
560 570 580 590 600
KGDRGETGSK GEQGLPGERG LRGEPGSVPN VDRLLETAGI KASALREIVE
610 620 630 640 650
TWDESSGSFL PVPERRRGPK GDSGEQGPPG KEGPIGFPGE RGLKGDRGDP
660 670 680 690 700
GPQGPPGLAL GERGPPGPSG LAGEPGKPGI PGLPGRAGGV GEAGRPGERG
710 720 730 740 750
ERGEKGERGE QGRDGPPGLP GTPGPPGPPG PKVSVDEPGP GLSGEQGPPG
760 770 780 790 800
LKGAKGEPGS NGDQGPKGDR GVPGIKGDRG EPGPRGQDGN PGLPGERGMA
810 820 830 840 850
GPEGKPGLQG PRGPPGPVGG HGDPGPPGAP GLAGPAGPQG PSGLKGEPGE
860 870 880 890 900
TGPPGRGLTG PTGAVGLPGP PGPSGLVGPQ GSPGLPGQVG ETGKPGAPGR
910 920 930 940 950
DGASGKDGDR GSPGVPGSPG LPGPVGPKGE PGPTGAPGQA VVGLPGAKGE
960 970 980 990 1000
KGAPGGLAGD LVGEPGAKGD RGLPGPRGEK GEAGRAGEPG DPGEDVSPGP
1010 1020
RQGRAWPEEC DGGHKGPLLG RGTCLSP
Length:1,027
Mass (Da):96,806
Last modified:April 26, 2005 - v1
Checksum:i59F1A5256985A6D3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB209645 mRNA. Translation: BAD92882.1.
RefSeqiNP_000085.1. NM_000094.3.
UniGeneiHs.476218.

Genome annotation databases

GeneIDi1294.
KEGGihsa:1294.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB209645 mRNA. Translation: BAD92882.1.
RefSeqiNP_000085.1. NM_000094.3.
UniGeneiHs.476218.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000332371.

Proteomic databases

PaxDbiQ59F16.
PRIDEiQ59F16.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1294.
KEGGihsa:1294.

Organism-specific databases

CTDi1294.
PharmGKBiPA26730.

Phylogenomic databases

eggNOGiKOG3544. Eukaryota.
ENOG410XNMM. LUCA.
HOVERGENiHBG004933.
KOiK16628.

Miscellaneous databases

GenomeRNAii1294.
NextBioi5251.

Gene expression databases

GenevisibleiQ59F16. HS.

Family and domain databases

InterProiIPR008160. Collagen.
[Graphical view]
PfamiPF01391. Collagen. 7 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Homo sapiens protein coding cDNA."
    Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ59F16_HUMAN
AccessioniPrimary (citable) accession number: Q59F16
Entry historyi
Integrated into UniProtKB/TrEMBL: April 26, 2005
Last sequence update: April 26, 2005
Last modified: March 16, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.