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Protein
Submitted name:

COL4A1 protein variant

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. extracellular matrix structural constituent Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
COL4A1 protein variantImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: InterPro
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ59F15.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000085652.
HOVERGENiHBG004933.

Family and domain databases

Gene3Di2.170.240.10. 1 hit.
InterProiIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamiPF01413. C4. 2 hits.
PF01391. Collagen. 8 hits.
[Graphical view]
SMARTiSM00111. C4. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 2 hits.
PROSITEiPS51403. NC1_IV. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q59F15-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
YRRISGASRA TGTPGRNRFP RAARGQGLPG ITGQSGLPGL PGQQGAPGIP
60 70 80 90 100
GFPGSKGEMG VMGTPGQPGS PGPVGAPGLP GEKGDHGFPG SSGPRGDPGL
110 120 130 140 150
KGDKGDVGLP GKPGSMDKVD MGSMKGQKGD QGEKGQIGPI GEKGSRGDPG
160 170 180 190 200
TPGVPGKDGQ AGQPGQPGPK GDPGISGTPG APGLPGPKGS VGGMGLPGTP
210 220 230 240 250
GEKGVPGIPG PQGSPGLPGD KGAKGEKGQA GPPGIGIPGL RGEKGDQGIA
260 270 280 290 300
GFPGSPGEKG EKGSIGIPGM PGSPGLKGSP GSVGYPGSPG LPGEKGDKGL
310 320 330 340 350
PGLDGIPGVK GEAGLPGTPG PTGPAGQKGE PGSDGIPGSA GEKGEPGLPG
360 370 380 390 400
RGFPGFPGAK GDKGSKGEVG FPGLAGSPGI PGSKGEQGFM GPPGPQGQPG
410 420 430 440 450
LPGSPGHATE GPKGDRGPQG QPGLPGLPGP MGPPGLPGID GVKGDKGNPG
460 470 480 490 500
WPGAPGVPGP KGDPGFQGMP GIGGSPGITG SKGDMGPPGV PGFQGPKGLP
510 520 530 540 550
GLQGIKGDQG DHGVPGAKGL PGPPGPPGPY DIIKGEPGLP GPEGPPGLKG
560 570 580 590 600
LQGLPGPKGQ QGVTGLVGIP GPPGIPGFDG APGQKGEMGP AGPTGPRGFP
610 620 630 640 650
GPPGPDGLPG SMGPPGTPSV DHGFLVTRHS QTIDDPQCPS GTKILYHGYS
660 670 680 690 700
LLYVQGNERA HGQDLGTAGS CLRKFSTMPF LFCNINNVCN FASRNDYSYW
710 720 730 740 750
LSTPEPMPMS MAPITGENIR PFISRCAVCE APAMVMAVHS QTIQIPPCPS
760 770 780 790 800
GWSSLWIGYS FVMHTSAGAE GSGQALASPG SCLEEFRSAP FIECHGRGTC
810 820 830 840
NYYANAYSFW LATIERSEMF KKPTPSTLKA GELRTHVSRC QVCMRRT
Length:847
Mass (Da):82,979
Last modified:April 26, 2005 - v1
Checksum:i3083068BDE54461F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB209646 mRNA. Translation: BAD92883.1.
UniGeneiHs.17441.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB209646 mRNA. Translation: BAD92883.1.
UniGeneiHs.17441.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ59F15.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOGENOMiHOG000085652.
HOVERGENiHBG004933.

Family and domain databases

Gene3Di2.170.240.10. 1 hit.
InterProiIPR016187. C-type_lectin_fold.
IPR008160. Collagen.
IPR001442. Collagen_VI_NC.
[Graphical view]
PfamiPF01413. C4. 2 hits.
PF01391. Collagen. 8 hits.
[Graphical view]
SMARTiSM00111. C4. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 2 hits.
PROSITEiPS51403. NC1_IV. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Homo sapiens protein coding cDNA."
    Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., Ohara O., Nagase T., Kikuno R.F.
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: SpleenImported.

Entry informationi

Entry nameiQ59F15_HUMAN
AccessioniPrimary (citable) accession number: Q59F15
Entry historyi
Integrated into UniProtKB/TrEMBL: April 26, 2005
Last sequence update: April 26, 2005
Last modified: October 29, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.