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Q59996

- RPSC_SYNY3

UniProt

Q59996 - RPSC_SYNY3

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Protein
Probable RNA polymerase sigma-C factor
Gene
sigC, sll0184
Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi362 – 38120H-T-H motif By similarity
Add
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable RNA polymerase sigma-C factor
Gene namesi
Name:sigC
Ordered Locus Names:sll0184
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 404404Probable RNA polymerase sigma-C factor
PRO_0000093937Add
BLAST

Proteomic databases

PaxDbiQ59996.

Interactioni

Protein-protein interaction databases

IntActiQ59996. 13 interactions.
STRINGi1148.sll0184.

Structurei

3D structure databases

ProteinModelPortaliQ59996.
SMRiQ59996. Positions 145-236.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi193 – 20614Polymerase core binding
Add
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family.

Phylogenomic databases

eggNOGiCOG0568.
HOGENOMiHOG000270273.
KOiK03087.
OMAiAQKVQRY.
OrthoDBiEOG6XHC70.
PhylomeDBiQ59996.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q59996-1 [UniParc]FASTAAdd to Basket

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MTKPSNDEPP LTNVRDLEAM LPLEEEDLTA DSQDLEYTAV AHRQQFSTDL    50
VRLYLQDIGR IPLLKRDEEV HIAQQVQSYL RLVEIQNRAA ESDAAIDQYQ 100
TAIAVHDQLL VQLGHRPSYE RWAKILGQTV ATLKQTLKSG KKRWAELAGL 150
TVEELENIEK QGITAKAHMI KANLRLVVSV AKKYQNRGLE LLDLIQEGTL 200
GLERAVEKFD PTKGYRFSTY SYWWIRQGIT RAIATQSRMI RLPVHITEKL 250
NKIKRAQRKI SQEKGHTPKI DEVAEELGMT PEQVREVLTQ VPRSVSLELK 300
VGQDKDTELM DLLETDTQSP EDELMREALQ NDMQEILLDL TPREQEVIAL 350
RFGFQDGVAH SLSEIGRILN LSRERVRQIE AKALQKLRHP RRRDRIRDYY 400
ENLG 404
Length:404
Mass (Da):46,581
Last modified:November 1, 1997 - v1
Checksum:iCDCBE67BF031D0F9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA10419.1.
PIRiS76573.
RefSeqiNP_442349.1. NC_000911.1.
YP_005652409.1. NC_017277.1.
YP_007452225.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA10419; BAA10419; BAA10419.
GeneIDi952470.
KEGGisyn:sll0184.
syy:SYNGTS_2456.
syz:MYO_124810.
PATRICi23842374. VBISynSp132158_2727.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA10419.1 .
PIRi S76573.
RefSeqi NP_442349.1. NC_000911.1.
YP_005652409.1. NC_017277.1.
YP_007452225.1. NC_020286.1.

3D structure databases

ProteinModelPortali Q59996.
SMRi Q59996. Positions 145-236.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q59996. 13 interactions.
STRINGi 1148.sll0184.

Proteomic databases

PaxDbi Q59996.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA10419 ; BAA10419 ; BAA10419 .
GeneIDi 952470.
KEGGi syn:sll0184.
syy:SYNGTS_2456.
syz:MYO_124810.
PATRICi 23842374. VBISynSp132158_2727.

Phylogenomic databases

eggNOGi COG0568.
HOGENOMi HOG000270273.
KOi K03087.
OMAi AQKVQRY.
OrthoDBi EOG6XHC70.
PhylomeDBi Q59996.

Family and domain databases

Gene3Di 1.10.10.10. 2 hits.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view ]
PRINTSi PR00046. SIGMA70FCT.
SUPFAMi SSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEi PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
    Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
    DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27184 / PCC 6803 / N-1.
  2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRPSC_SYNY3
AccessioniPrimary (citable) accession number: Q59996
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi