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Q59996

- RPSC_SYNY3

UniProt

Q59996 - RPSC_SYNY3

Protein

Probable RNA polymerase sigma-C factor

Gene

sigC

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 98 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi362 – 38120H-T-H motifBy similarityAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factor

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable RNA polymerase sigma-C factor
    Gene namesi
    Name:sigC
    Ordered Locus Names:sll0184
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 404404Probable RNA polymerase sigma-C factorPRO_0000093937Add
    BLAST

    Proteomic databases

    PaxDbiQ59996.

    Interactioni

    Protein-protein interaction databases

    IntActiQ59996. 13 interactions.
    STRINGi1148.sll0184.

    Structurei

    3D structure databases

    ProteinModelPortaliQ59996.
    SMRiQ59996. Positions 145-236.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi193 – 20614Polymerase core bindingAdd
    BLAST

    Sequence similaritiesi

    Belongs to the sigma-70 factor family.Curated

    Phylogenomic databases

    eggNOGiCOG0568.
    HOGENOMiHOG000270273.
    KOiK03087.
    OMAiAQKVQRY.
    OrthoDBiEOG6XHC70.
    PhylomeDBiQ59996.

    Family and domain databases

    Gene3Di1.10.10.10. 2 hits.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR000943. RNA_pol_sigma70.
    IPR009042. RNA_pol_sigma70_r1_2.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007624. RNA_pol_sigma70_r3.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR017848. RNA_pol_sigma_RpoD_cyanobac.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00140. Sigma70_r1_2. 1 hit.
    PF04542. Sigma70_r2. 1 hit.
    PF04539. Sigma70_r3. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view]
    PRINTSiPR00046. SIGMA70FCT.
    SUPFAMiSSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEiPS00715. SIGMA70_1. 1 hit.
    PS00716. SIGMA70_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q59996-1 [UniParc]FASTAAdd to Basket

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    MTKPSNDEPP LTNVRDLEAM LPLEEEDLTA DSQDLEYTAV AHRQQFSTDL    50
    VRLYLQDIGR IPLLKRDEEV HIAQQVQSYL RLVEIQNRAA ESDAAIDQYQ 100
    TAIAVHDQLL VQLGHRPSYE RWAKILGQTV ATLKQTLKSG KKRWAELAGL 150
    TVEELENIEK QGITAKAHMI KANLRLVVSV AKKYQNRGLE LLDLIQEGTL 200
    GLERAVEKFD PTKGYRFSTY SYWWIRQGIT RAIATQSRMI RLPVHITEKL 250
    NKIKRAQRKI SQEKGHTPKI DEVAEELGMT PEQVREVLTQ VPRSVSLELK 300
    VGQDKDTELM DLLETDTQSP EDELMREALQ NDMQEILLDL TPREQEVIAL 350
    RFGFQDGVAH SLSEIGRILN LSRERVRQIE AKALQKLRHP RRRDRIRDYY 400
    ENLG 404
    Length:404
    Mass (Da):46,581
    Last modified:November 1, 1997 - v1
    Checksum:iCDCBE67BF031D0F9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA10419.1.
    PIRiS76573.
    RefSeqiNP_442349.1. NC_000911.1.
    YP_005652409.1. NC_017277.1.
    YP_007452225.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA10419; BAA10419; BAA10419.
    GeneIDi952470.
    KEGGisyn:sll0184.
    syy:SYNGTS_2456.
    syz:MYO_124810.
    PATRICi23842374. VBISynSp132158_2727.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA10419.1 .
    PIRi S76573.
    RefSeqi NP_442349.1. NC_000911.1.
    YP_005652409.1. NC_017277.1.
    YP_007452225.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali Q59996.
    SMRi Q59996. Positions 145-236.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q59996. 13 interactions.
    STRINGi 1148.sll0184.

    Proteomic databases

    PaxDbi Q59996.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA10419 ; BAA10419 ; BAA10419 .
    GeneIDi 952470.
    KEGGi syn:sll0184.
    syy:SYNGTS_2456.
    syz:MYO_124810.
    PATRICi 23842374. VBISynSp132158_2727.

    Phylogenomic databases

    eggNOGi COG0568.
    HOGENOMi HOG000270273.
    KOi K03087.
    OMAi AQKVQRY.
    OrthoDBi EOG6XHC70.
    PhylomeDBi Q59996.

    Family and domain databases

    Gene3Di 1.10.10.10. 2 hits.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR000943. RNA_pol_sigma70.
    IPR009042. RNA_pol_sigma70_r1_2.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007624. RNA_pol_sigma70_r3.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR017848. RNA_pol_sigma_RpoD_cyanobac.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00140. Sigma70_r1_2. 1 hit.
    PF04542. Sigma70_r2. 1 hit.
    PF04539. Sigma70_r3. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view ]
    PRINTSi PR00046. SIGMA70FCT.
    SUPFAMi SSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02997. Sig70-cyanoRpoD. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEi PS00715. SIGMA70_1. 1 hit.
    PS00716. SIGMA70_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
      Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
      DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 27184 / PCC 6803 / N-1.
    2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiRPSC_SYNY3
    AccessioniPrimary (citable) accession number: Q59996
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 98 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3