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Q59996 (RPSC_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 97. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable RNA polymerase sigma-C factor
Gene names
Name:sigC
Ordered Locus Names:sll0184
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length404 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.

Sequence similarities

Belongs to the sigma-70 factor family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 404404Probable RNA polymerase sigma-C factor
PRO_0000093937

Regions

DNA binding362 – 38120H-T-H motif By similarity
Motif193 – 20614Polymerase core binding

Sequences

Sequence LengthMass (Da)Tools
Q59996 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: CDCBE67BF031D0F9

FASTA40446,581
        10         20         30         40         50         60 
MTKPSNDEPP LTNVRDLEAM LPLEEEDLTA DSQDLEYTAV AHRQQFSTDL VRLYLQDIGR 

        70         80         90        100        110        120 
IPLLKRDEEV HIAQQVQSYL RLVEIQNRAA ESDAAIDQYQ TAIAVHDQLL VQLGHRPSYE 

       130        140        150        160        170        180 
RWAKILGQTV ATLKQTLKSG KKRWAELAGL TVEELENIEK QGITAKAHMI KANLRLVVSV 

       190        200        210        220        230        240 
AKKYQNRGLE LLDLIQEGTL GLERAVEKFD PTKGYRFSTY SYWWIRQGIT RAIATQSRMI 

       250        260        270        280        290        300 
RLPVHITEKL NKIKRAQRKI SQEKGHTPKI DEVAEELGMT PEQVREVLTQ VPRSVSLELK 

       310        320        330        340        350        360 
VGQDKDTELM DLLETDTQSP EDELMREALQ NDMQEILLDL TPREQEVIAL RFGFQDGVAH 

       370        380        390        400 
SLSEIGRILN LSRERVRQIE AKALQKLRHP RRRDRIRDYY ENLG 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27184 / PCC 6803 / N-1.
[2]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA10419.1.
PIRS76573.
RefSeqNP_442349.1. NC_000911.1.
YP_005652409.1. NC_017277.1.
YP_007452225.1. NC_020286.1.

3D structure databases

ProteinModelPortalQ59996.
SMRQ59996. Positions 145-236.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ59996. 13 interactions.
STRING1148.sll0184.

Proteomic databases

PaxDbQ59996.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA10419; BAA10419; BAA10419.
GeneID952470.
KEGGsyn:sll0184.
syy:SYNGTS_2456.
syz:MYO_124810.
PATRIC23842374. VBISynSp132158_2727.

Phylogenomic databases

eggNOGCOG0568.
HOGENOMHOG000270273.
KOK03087.
OMAAQKVQRY.
OrthoDBEOG6XHC70.
PhylomeDBQ59996.

Family and domain databases

Gene3D1.10.10.10. 2 hits.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRPSC_SYNY3
AccessionPrimary (citable) accession number: Q59996
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families