Xys1 - Streptomyces halstedii

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Unreviewed, UniProtKB/TrEMBL Q59922 (Q59922_STRHA)

Last modified June 16, 2009. Version 50. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Xys1 EMBL AAC45554.1
EC=3.2.1.8

Gene names

Name:

xysA EMBL AAC45554.1

Organism

Streptomyces halstedii EMBL AAC45554.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Streptomycineae › Streptomycetaceae › Streptomyces

Protein attributes

Sequence length	461 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 10 (cellulase F) family. RuleBase RU003432V0

Ontologies

Keywords
Molecular function	Glycosidase RuleBase RU003432V0 Hydrolase
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro endo-1,4-beta-xylanase activity Inferred from electronic annotation. Source: EC polysaccharide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q59922-1 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 086A7EE6B7C78341
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461

47,930

        10         20         30         40         50         60 
MAQNPPVGGR TRRRPQARAR CALSLLTAGV LAAAGVVALA GTAQAAGALG DAAAAKGRYF 

        70         80         90        100        110        120 
GAAVAANHLG EAAYASTLDA QFGSVTPENE MKWDAVESSR NSFSFSAADR IVSHAQSKGM 

       130        140        150        160        170        180 
KVRGHTLVWH SQLPGWVSPL AATDLRSAMN NHITQVMTHY KGKIHSWDVV NEAFQDGGSG 

       190        200        210        220        230        240 
ARRSSPFQDK LGNGFIEEAF RTARTVDADA KLCYNDYNTD GQNAKSNAVY EMVKDFKQRG 

       250        260        270        280        290        300 
VPIDCVGFQS HFNSNSPVPS DFQANLQRFA DLGVDVQITE LDIEGSGSAQ AANYTKVVNA 

       310        320        330        340        350        360 
CLAVTRCTGI TVWGVTDKYS WRSGGTPLLF DGDYNKKPAY DAVLAALGGS GGGGDDGGEG 

       370        380        390        400        410        420 
GDGACTATYT RTSTWNGGYN GQVTVKAGGS GITGWAVPVT VASPQKVSAV WNGTPTTTGD 

       430        440        450        460 
VMTVRHSWNG TLAAGASTTF GFTVQTNGGT SAPVVGACTA S

References

[1]	"Analysis of xysA, a gene from Streptomyces halstedii JM8 that encodes a 45-kilodalton modular xylanase, Xys1." Ruiz-Arribas A., Sanchez P., Calvete J.J., Raida M., Fernandez-Abalos J.M., Santamaria R.I. Appl. Environ. Microbiol. 63:2983-2988(1997) [PubMed: 9251186] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: JM8 EMBL AAC45554.1.
[2]	Santamaria-Sanchez R.I., Ruiz-Arribas A., Fernandez-Abalos J.M., Sanchez P., Garda-Salas A.L. Submitted (NOV-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: JM8 EMBL AAC45554.1.
[3]	"Structure of xylanase Xys1delta from Streptomyces halstedii." Canals A., Vega M.C., Gomis-Ruth F.X., Diaz M., Santamaria R R.I., Coll M. Acta Crystallogr. D Biol. Crystallogr. 59:1447-1453(2003) [PubMed: 12876348] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.78 ANGSTROMS) OF 46-347.

Cross-references

Sequence databases

U41627 Genomic DNA. Translation: AAC45554.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1NQ6	X-ray	1.78	A	46-347	[»]

ModBase

Protein family/group databases

CAZy

CBM2. Carbohydrate-Binding Module Family 2.
GH10. Glycoside Hydrolase Family 10.

Family and domain databases

InterPro

IPR001919. CBD_bac.
IPR012291. CBD_carb_bd.
IPR018366. CBM2_CS.
IPR001000. Glyco_hydro_10.
IPR013781. Glyco_hydro_sg_catalytic.
[Graphical view]

Gene3D

G3DSA:2.60.40.290. CBD_carb_bd. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.

Pfam

PF00553. CBM_2. 1 hit.
PF00331. Glyco_hydro_10. 1 hit.
[Graphical view]

PRINTS

PR00134. GLHYDRLASE10.

SMART

SM00637. CBD_II. 1 hit.
SM00633. Glyco_10. 1 hit.
[Graphical view]

PROSITE

PS51173. CBM2. 1 hit.
PS00561. CBM2_A. 1 hit.
PS00591. GLYCOSYL_HYDROL_F10. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q59922_STRHA

Accession

Primary (citable) accession number: Q59922

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	June 16, 2009
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information