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Protein

Endo-1,4-beta-xylanase

Gene

Xyn1

Organism
Ruminococcus sp.
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.PROSITE-ProRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei123NucleophilePROSITE-ProRule annotation1
Active sitei224Proton donorPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidasePROSITE-ProRule annotationImported, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationPROSITE-ProRule annotationImported

Enzyme and pathway databases

UniPathwayiUPA00114.

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
GH11. Glycoside Hydrolase Family 11.
ESTHERirumsp-XYN1. A85-Feruloyl-Esterase.

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanasePROSITE-ProRule annotation (EC:3.2.1.8PROSITE-ProRule annotation)
Gene namesi
Name:Xyn1Imported
OrganismiRuminococcus sp.Imported
Taxonomic identifieri41978 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminococcus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 30Sequence analysisAdd BLAST30
ChainiPRO_500425234831 – 789Endo-1,4-beta-xylanaseSequence analysisAdd BLAST759

Structurei

3D structure databases

ProteinModelPortaliQ59790.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 237GH11 (glycosyl hydrolase family 11)InterPro annotationAdd BLAST208
Domaini438 – 506DockerinInterPro annotationAdd BLAST69

Sequence similaritiesi

Belongs to the glycosyl hydrolase 11 (cellulase G) family.PROSITE-ProRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
3.40.50.1820. 1 hit.
InterProiView protein in InterPro
IPR029058. AB_hydrolase.
IPR003305. CenC_carb-bd.
IPR013320. ConA-like_dom.
IPR002105. Dockerin_1_rpt.
IPR016134. Dockerin_dom.
IPR018247. EF_Hand_1_Ca_BS.
IPR000801. Esterase_put.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR001137. Glyco_hydro_11.
PfamiView protein in Pfam
PF02018. CBM_4_9. 1 hit.
PF00404. Dockerin_1. 1 hit.
PF00756. Esterase. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF53474. SSF53474. 1 hit.
SSF63446. SSF63446. 1 hit.
PROSITEiView protein in PROSITE
PS51766. DOCKERIN. 1 hit.
PS00018. EF_HAND_1. 1 hit.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q59790-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKTVKQFIS SAVTALMVAA SLPAVPSVNA ADAQQRGNIG GFDYEMWNQN
60 70 80 90 100
GQGQVSMTPK AGSFTCSWSN IENFLARMGK NYDSQKKNYK AFGDITLSYD
110 120 130 140 150
VEYTPKGNSY MCVYGWTRNP LMEYYIVEGW GDWRPPGNDG ENKGTVTLNG
160 170 180 190 200
NTYDIRKTMR YNQPSLDGTA TFPQYWSVRQ KSGSQNNTTN YMKGTISVSK
210 220 230 240 250
HFDAWSKAGL DMSGTLYEVS LNIEGYRSSG NANVKAISFD GSIPEPTSEP
260 270 280 290 300
VTQPVVKAEP DANGYYFKEK FESGAGDWSA RGTGAKVTSS DGFNGSKGIL
310 320 330 340 350
VSGRGDNWHG AQLTLDSSAF TAGETYSFGA LVKQDGESST AMKLTLQYND
360 370 380 390 400
ASGTANYDKV AEFTAPKGEW VDLSNTSFTI PSGASDLILY VEAPDSLTDF
410 420 430 440 450
YIDNAFGGIK NTSPLEDVGS HTISTPGSET TTVTTASNKG IRGDINGDGV
460 470 480 490 500
INSFDLAPLR RGILKMMSGS GSTPENADVN GDGTVNVADL LLLQKFILGM
510 520 530 540 550
EKSFPDPVTT TTTKPITTTT EKIVTTTTSS SSSSSGKNLN ADIRKDMPTS
560 570 580 590 600
VPGGNEKSGG CKVEKKTYNC KFTGGQKSCN VILPPNYSAS KQYPVMYVLH
610 620 630 640 650
GIGGNEGSMV SGMGVQELLA GLTANGKAEE MIIVLPSQYT SKNGNQGGGF
660 670 680 690 700
GINQEVCAAY DNFLYDISDS LIPFIEANYP VKTGRENRAI TGFSMGGREA
710 720 730 740 750
IYIGLMRPDL FAYVGGACPA PGITPGKDMF MEHPGCMQES EMKFRDVGPE
760 770 780
PNVFMITGGT NDGVVGTFPK QYSDILTRNG VDQRLPVYP
Length:789
Mass (Da):84,713
Last modified:November 1, 1996 - v1
Checksum:i4B589385EB2F2E81
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z49970 Genomic DNA. Translation: CAA90271.1.
PIRiS58235.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z49970 Genomic DNA. Translation: CAA90271.1.
PIRiS58235.

3D structure databases

ProteinModelPortaliQ59790.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
GH11. Glycoside Hydrolase Family 11.
ESTHERirumsp-XYN1. A85-Feruloyl-Esterase.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

UniPathwayiUPA00114.

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
3.40.50.1820. 1 hit.
InterProiView protein in InterPro
IPR029058. AB_hydrolase.
IPR003305. CenC_carb-bd.
IPR013320. ConA-like_dom.
IPR002105. Dockerin_1_rpt.
IPR016134. Dockerin_dom.
IPR018247. EF_Hand_1_Ca_BS.
IPR000801. Esterase_put.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR001137. Glyco_hydro_11.
PfamiView protein in Pfam
PF02018. CBM_4_9. 1 hit.
PF00404. Dockerin_1. 1 hit.
PF00756. Esterase. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF53474. SSF53474. 1 hit.
SSF63446. SSF63446. 1 hit.
PROSITEiView protein in PROSITE
PS51766. DOCKERIN. 1 hit.
PS00018. EF_HAND_1. 1 hit.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ59790_9FIRM
AccessioniPrimary (citable) accession number: Q59790
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 10, 2017
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.