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Protein
Submitted name:

Pectate lyase

Gene

pelB

Organism
Dickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradationUniRule annotation

Enzyme and pathway databases

BRENDAi4.2.2.2. 2141.

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Names & Taxonomyi

Protein namesi
Submitted name:
Pectate lyaseImported (EC:4.2.2.2Imported)
Gene namesi
Name:pelBImported
OrganismiDickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi)Imported
Taxonomic identifieri556 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaeDickeya

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 22Sequence analysisAdd BLAST22
ChainiPRO_500425233223 – 375Sequence analysisAdd BLAST353

Structurei

3D structure databases

ProteinModelPortaliQ59419.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini50 – 285Amb_allInterPro annotationAdd BLAST236

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Q59419-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSLITPITA GLLLALSQPL LAATDTGGYA VTAGGNVTGA VSKTATSMQD
60 70 80 90 100
IVDIIAAARL DANGKKVKGG AYPLVITYTG NEDSLINAAA ANICGQWSKD
110 120 130 140 150
ARGVEIKEFT KGITIIGANG SSANFGIWIK KSSDVVVQNM RIGYLPGGAK
160 170 180 190 200
DGDMVRVDDS PNVWVDHNEL FAANHECDGT PDGDTTFEAA VDIKGASDYV
210 220 230 240 250
TVSYNYIHGV KKVGLDGSSN SDTGANITYH HNRYNDVNAR LPLQRGGLVH
260 270 280 290 300
AYNNLYSNVT SSGLNVRQNG QALIESNWFE NAVNPVTSRY DGKNFGTWVL
310 320 330 340 350
KNNNITKPAD FSTYSITWTA DTKAYVNADS WTSTGTFPTV AYSYSPVSAQ
360 370
CVKDNLANYA GVGKNLATLT SARCK
Length:375
Mass (Da):39,836
Last modified:November 1, 1996 - v1
Checksum:iE2B128078D1CB648
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X67475 Genomic DNA. Translation: CAA47821.1.
PIRiS25262.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X67475 Genomic DNA. Translation: CAA47821.1.
PIRiS25262.

3D structure databases

ProteinModelPortaliQ59419.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

BRENDAi4.2.2.2. 2141.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
[Graphical view]
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ59419_DICCH
AccessioniPrimary (citable) accession number: Q59419
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.