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Protein

Oligogalacturonide lyase

Gene

ogl

Organism
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Involved in degradation of pectin, which causes soft-rod disease in plants.

Catalytic activityi

4-(4-deoxy-beta-D-galact-4-enuronosyl)-D-galacturonate = 2 5-dehydro-4-deoxy-D-glucuronate.

Pathwayi: pectin degradation

This protein is involved in step 3 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase (pemA), Pectinesterase (pmeB)
  2. Pectate lyase 2 (pel2), Pectate lyase 3 (pel3), Pectate lyase 1 (pel1)
  3. Oligogalacturonide lyase (ogl)
  4. 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (kduI), 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (kduI)
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Enzyme and pathway databases

BioCyciPATR218491:GJNB-2470-MONOMER.
UniPathwayiUPA00545; UER00825.

Protein family/group databases

CAZyiPL22. Polysaccharide Lyase Family 22.

Names & Taxonomyi

Protein namesi
Recommended name:
Oligogalacturonide lyase (EC:4.2.2.6)
Gene namesi
Name:ogl
Ordered Locus Names:ECA2426
OrganismiPectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
Taxonomic identifieri218491 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
Proteomesi
  • UP000007966 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 388388Oligogalacturonide lyasePRO_0000058033Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi218491.ECA2426.

Structurei

3D structure databases

ProteinModelPortaliQ59418.
SMRiQ59418. Positions 2-385.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105CAZ. Bacteria.
COG0823. LUCA.
HOGENOMiHOG000219311.
KOiK01730.
OMAiHLMSNFD.
OrthoDBiPOG091H0XA8.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027946. Ogl_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
PfamiPF14583. Pectate_lyase22. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q59418-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKGNKIPLT FHTYQDAATG TEVVRLTPPD VICHRNYFYQ KCFFNDGSKL
60 70 80 90 100
LFGAAFDGPW NYYLLDLKEQ NATQLTEGKG DNTFGGFLSP NDDALYYVKN
110 120 130 140 150
TRNLMRVDLT TLEEKTIYQV PDDWVGYGTW VANSDCTKMV GIEIKKEDWK
160 170 180 190 200
PLTDWKKFQE FYFTNPCCRL IRVDLVTGEA ETILQENQWL GHPIYRPGDD
210 220 230 240 250
NTVAFCHEGP HDLVDARMWF INEDGTNMRK VKEHAEGESC THEFWVPDGS
260 270 280 290 300
AMIYVSYLKD DTNRYIRSID PVTLEDRQLR VMPPCSHLMS NYDGTLLVGD
310 320 330 340 350
GSDAPVDVQD DGGYKIENDP FLYVFNLKTG KEHRIAQHNT SWEVLEGDRQ
360 370 380
VTHPHPSFTP DNKQVLFTSD VDGKPALYLA KVPDSVWN
Length:388
Mass (Da):44,457
Last modified:April 18, 2006 - v2
Checksum:i8325C4278EA7AAA4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti17 – 171A → S in CAA54566 (Ref. 1) Curated
Sequence conflicti71 – 711N → S in CAA54566 (Ref. 1) Curated
Sequence conflicti110 – 1101T → A in CAA54566 (Ref. 1) Curated
Sequence conflicti141 – 1411G → S in CAA54566 (Ref. 1) Curated
Sequence conflicti176 – 1761V → I in CAA54566 (Ref. 1) Curated
Sequence conflicti304 – 3041A → V in CAA54566 (Ref. 1) Curated
Sequence conflicti343 – 3431E → D in CAA54566 (Ref. 1) Curated
Sequence conflicti388 – 3881N → H in CAA54566 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X77391 Genomic DNA. Translation: CAA54566.1.
BX950851 Genomic DNA. Translation: CAG75329.1.
PIRiS41940.
RefSeqiWP_011093978.1. NC_004547.2.

Genome annotation databases

EnsemblBacteriaiCAG75329; CAG75329; ECA2426.
GeneIDi2883542.
KEGGieca:ECA2426.
PATRICi20480144. VBIPecAtr54885_2457.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X77391 Genomic DNA. Translation: CAA54566.1.
BX950851 Genomic DNA. Translation: CAG75329.1.
PIRiS41940.
RefSeqiWP_011093978.1. NC_004547.2.

3D structure databases

ProteinModelPortaliQ59418.
SMRiQ59418. Positions 2-385.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi218491.ECA2426.

Protein family/group databases

CAZyiPL22. Polysaccharide Lyase Family 22.

Protocols and materials databases

DNASUi2883542.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAG75329; CAG75329; ECA2426.
GeneIDi2883542.
KEGGieca:ECA2426.
PATRICi20480144. VBIPecAtr54885_2457.

Phylogenomic databases

eggNOGiENOG4105CAZ. Bacteria.
COG0823. LUCA.
HOGENOMiHOG000219311.
KOiK01730.
OMAiHLMSNFD.
OrthoDBiPOG091H0XA8.

Enzyme and pathway databases

UniPathwayiUPA00545; UER00825.
BioCyciPATR218491:GJNB-2470-MONOMER.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR027946. Ogl_dom.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
PfamiPF14583. Pectate_lyase22. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiOGL_PECAS
AccessioniPrimary (citable) accession number: Q59418
Secondary accession number(s): Q6D4G4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: April 18, 2006
Last modified: September 7, 2016
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.