Q59289 (Q59289_PEDHE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Heparinase III protein EMBL AAB18278.1
EC=4.2.2.8 EMBL AAB18278.1

Gene names

Name:

HepC EMBL AAB18278.1

Organism

Pedobacter heparinus (Flavobacterium heparinum) EMBL AAB18278.1

Taxonomic identifier

984 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Sphingobacteriaceae › Pedobacter

Protein attributes

Sequence length	659 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL AAB18278.1
Molecular function	Lyase EMBL AAB18278.1
Gene Ontology (GO)
Molecular function	heparin-sulfate lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 24	24	Potential EMBL AAB18278.1
	Chain	25 – 659	635	Potential EMBL AAB18278.1		PRO_5000144614

Sequences

	Sequence		Length	Mass (Da)
	Q59289 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: B73EDF10A1256FE2	FASTA	659	75,807
	10 20 30 40 50 60 MTTKIFKRII VFAVIALSSG NILAQSSSIT RKDFDHINLE YSGLEKVNKA VAAGNYDDAA 70 80 90 100 110 120 KALLAYYREK SKAREPDFSN AEKPADIRQP IDKVTREMAD KALVHQFQPH KGYGYFDYGK 130 140 150 160 170 180 DINWQMWPVK DNEVRWQLHR VKWWQAMALV YHATGDEKYA REWVYQYSDW ARKNPLGLSQ 190 200 210 220 230 240 DNDKFVWRPL EVSDRVQSLP PTFSLFVNSP AFTPAFLMEF LNSYHQQADY LSTHYAEQGN 250 260 270 280 290 300 HRLFEAQRNL FAGVSFPEFK DSPRWRQTGI SVLNTEIKKQ VYADGMQFEL SPIYHVAAID 310 320 330 340 350 360 IFLKAYGSAK RVNLEKEFPQ SYVQTVENMI MALISISLPD YNTPMFGDSW ITDKNFRMAQ 370 380 390 400 410 420 FASWARVFPA NQAIKYFATD GKQGKAPNFL SKALSNAGFY TFRSGWDKNA TVMVLKASPP 430 440 450 460 470 480 GEFHAQPDNG TFELFIKGRN FTPDAGVFVY SGDEAIMKLR NWYRQTRIHS TLTLDNQNMV 490 500 510 520 530 540 ITKARQNKWE TGNNLDVLTY TNPSYPNLDH QRSVLFINKK YFLVIDRAIG EATGNLGVHW 550 560 570 580 590 600 QLKEDSNPVF DKTKNRVYTT YRDGNNLMIQ SLNADRTSLN EEEGKVSYVY NKELKRPAFV 610 620 630 640 650 FEKPKKNAGT QNFVSIVYPY DGQKAPEISI RENKGNDFEK GKLNLTLTIN GKQQLVLVP

References

[1]	"Isolation and expression in Escherichia coli of hepB and hepC, genes coding for the glycosaminoglycan-degrading enzymes heparinase II and heparinase III, respectively, from Flavobacterium heparinum." Su H., Blain F., Musil R.A., Zimmermann J.J., Gu K., Bennett D.C. Appl. Environ. Microbiol. 62:2723-2734(1996) [PubMed: 8702264] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	Tkalec A.L. Submitted (MAY-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	"Heparinase III from Flavobacterium heparinum: cloning and recombinant expression in Escherichia coli." Godavarti R., Davis M., Venkataraman G., Cooney C., Langer R., Sasisekharan R. Biochem. Biophys. Res. Commun. 225:751-758(1996) [PubMed: 8780685] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U27586 Genomic DNA. Translation: AAB18278.1.
PIR	JC4910.
3D structure databases
ModBase	Search...
Protein family/group databases
CAZy	PL12. Polysaccharide Lyase Family 12.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
InterPro	IPR008929. Chondroitin_lyas. IPR012480. Hepar_II_III. [Graphical view]
Pfam	PF07940. Hepar_II_III. 1 hit. [Graphical view]
SUPFAM	SSF48230. Chondroitin_lyas. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q59289_PEDHE

Accession

Primary (citable) accession number: Q59289

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)