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Protein

Beta-xylanase

Gene

xynC

Organism
Cellulomonas fimi
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
CBM9. Carbohydrate-Binding Module Family 9.
GH10. Glycoside Hydrolase Family 10.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xynCImported
OrganismiCellulomonas fimiImported
Taxonomic identifieri1708 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesCellulomonadaceaeCellulomonas

Interactioni

Protein-protein interaction databases

STRINGi590998.Celf_0574.

Structurei

3D structure databases

ProteinModelPortaliQ59278.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini53 – 237185NodB homologyInterPro annotationAdd
BLAST
Domaini401 – 731331GH10 (glycosyl hydrolase family 10)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D9F. Bacteria.
COG0726. LUCA.
COG3693. LUCA.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
2.60.40.1190. 1 hit.
3.20.20.370. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR010502. Carb-bd_dom_fam9.
IPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF06452. CBM9_1. 1 hit.
PF02018. CBM_4_9. 1 hit.
PF00331. Glyco_hydro_10. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS51760. GH10_2. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q59278-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYLDGGDTAP YPDLLLDDVV ITGQAPTDPG GVVPGGAVDP TTTPVATARG
60 70 80 90 100
TGDVSALTFD DGPNGATTTA LLDFLAERDI RATFCVIGQN IQAPGGADVL
110 120 130 140 150
RRIVADGHTL CNHTTSYADM GGWTAEQVRA DLVENLGIIR DALGDPDAKV
160 170 180 190 200
PYFRAPNGSW GVTPGVAVAL GMQPLAVTNT IDDWSTQDVP TLTSNLRDAM
210 220 230 240 250
KAGQVVLAHD GGGDRSGTLA AVQTVVDERL AAGWTFTLPT GGADGGSSVP
260 270 280 290 300
TGLSNDFEAG LGVWGPRGDA TVTLSDDAHG GAQAALVAGR TQAWHGIGAT
310 320 330 340 350
VTDVFQTGRT YTVDAWVKLA AGATEPADLR ISVQRDNAGE STYDTVTTAT
360 370 380 390 400
GVTADAWTHV QAQYTMAAAE SALLYVESSS SLASFLVDDV VVSGSTAPPV
410 420 430 440 450
QTDIPSLKDE LPWPVGVAID ERETVGTGEQ LVVKHYDQIT AENAMKPESI
460 470 480 490 500
QPTEGAFTFE AGDALIDSAV RNGQRVYGHT LVWHSQTPDW FFTHADGTPL
510 520 530 540 550
TSSAADQQIL RDRMRTHIET VADHYRQKYG EYGTAGNPIV AYDVVNEAIA
560 570 580 590 600
ESESDGLRRS RWFEVLGEQY LDLAFQYASQ AFNGGDTDGP VQLFLNDYNT
610 620 630 640 650
ELPAKRRAML DVVNRLLARD VPVDGLGHQF HVNLLQPVSQ MKASIDAFAT
660 670 680 690 700
TGLLQAVTEL DAPIDGTVSQ EKLVAQGYYY ADVFDMLRQY PDLFSVTLWG
710 720 730 740 750
PYDSRSWREG APLPFDDDLQ AKPAFWGIVD RGELPTLTRL ADAHAGTPTG
760 770 780 790 800
VDDPTWRLLP ETSFGDATGF QLRWSADGLV AYVEVADATD DGADDVVDLF
810 820 830 840 850
AADQHVTVHR SDAGVVATAS RTAWPCARGR GPDAGRDRAV RRARHDGASG
860 870 880 890 900
ERRSWNDLSH GQEDGERLGV VTLVEPVGYV AAVQASTAPV IDGVVDEAWA
910 920 930 940 950
DAPVLTTDVQ VEGTPGATAE IRVLWHDDAV DVLATVADPV VDETATNAWE
960 970 980 990 1000
QDSVEIFVDP VNAKAGAYTP QDGQYRISAS NAQSVSGDLA VIGERLTSAT
1010 1020 1030 1040 1050
ALVDGGYVVE ASIALGRDVT VGDLVGLDFQ VNDATAGVRG SVRTWTDPTG
1060 1070 1080 1090 1100
RSYQSTARWG VAELVAPAVE PGPVLTLGAG SVAAGKKLAV DLAGFEPKAK
1110 1120 1130 1140 1150
VRLVLDRVGA APTAPSRSGL FGQLVDGLSA WYWKDVELGS VRTDADGAAS
1160 1170 1180
ATVKVPAWVL PGDFEVKAYV AGEVVASAPV RVRPVFS
Length:1,187
Mass (Da):125,379
Last modified:November 1, 1996 - v1
Checksum:i3AF369D3265E3223
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50866 Genomic DNA. Translation: CAA90745.1.
PIRiT31351.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50866 Genomic DNA. Translation: CAA90745.1.
PIRiT31351.

3D structure databases

ProteinModelPortaliQ59278.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi590998.Celf_0574.

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
CBM9. Carbohydrate-Binding Module Family 9.
GH10. Glycoside Hydrolase Family 10.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4105D9F. Bacteria.
COG0726. LUCA.
COG3693. LUCA.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
2.60.40.1190. 1 hit.
3.20.20.370. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR010502. Carb-bd_dom_fam9.
IPR003305. CenC_carb-bd.
IPR008979. Galactose-bd-like.
IPR001000. GH10.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF06452. CBM9_1. 1 hit.
PF02018. CBM_4_9. 1 hit.
PF00331. Glyco_hydro_10. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
PRINTSiPR00134. GLHYDRLASE10.
SMARTiSM00633. Glyco_10. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS51760. GH10_2. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A modular xylanase from mesophilic Cellulomonas fimi contains the same cellulose-binding and thermostabilizing domains as xylanases from thermophilic bacteria."
    Clarke J.H., Davidson K., Gilbert H.J., Fontes C.M., Hazlewood G.P.
    FEMS Microbiol. Lett. 139:27-35(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ59278_CELFI
AccessioniPrimary (citable) accession number: Q59278
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: April 13, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.