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Protein

RNA polymerase sigma factor

Gene

sigK

Organism
Clostridium acetobutylicum
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:sigKImported
OrganismiClostridium acetobutylicumImported
Taxonomic identifieri1488 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Structurei

3D structure databases

ProteinModelPortaliQ59264
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini78 – 91RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini198 – 224RNA_pol_sigma70InterPro annotationAdd BLAST27

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105DMD Bacteria
COG1191 LUCA
HOGENOMiHOG000270274

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR014209 RNA_pol_sigma-K
IPR000943 RNA_pol_sigma70
IPR007627 RNA_pol_sigma70_r2
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF04545 Sigma70_r4, 1 hit
PIRSFiPIRSF000770 RNA_pol_sigma-SigE/K, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit
TIGR02846 spore_sigmaK, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q59264-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFVMYCLFNI VGSITFFVAY IGNGASFPQP LSESEEKYYL KKLKEGDPLA
60 70 80 90 100
KNILIERNLR LVAHIVKKYS YSGKEVDDLI SIGTIGLIKA IDSYNVSKGT
110 120 130 140 150
RLATYAARCI ENEILMLIRN NKKSKNEVYL QDPIGVDKEG NEISLIDILS
160 170 180 190 200
SDDDSVIEIV ENRIQIGKLY VEINRVLKGR EKAIIKMRYG LGDGKPRNQR
210 220 230
EIAQILGISR SYVSRIEKRA LKKLYRQLNG NCKI
Length:234
Mass (Da):26,586
Last modified:November 1, 1996 - v1
Checksum:i091DDD27A22BC1E4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L23317 Genomic DNA Translation: AAB94775.1
PIRiD97108
I40822
RefSeqiWP_010964996.1, NZ_PIQQ01000034.1

Similar proteinsi

Entry informationi

Entry nameiQ59264_CLOAT
AccessioniPrimary (citable) accession number: Q59264
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 131 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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