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Protein

Endo-1,4-beta-xylanase

Gene

xynY

Organism
Bacillus sp. YA-335
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolism, Polysaccharide degradation, Xylan degradationUniRule annotationImported

Enzyme and pathway databases

UniPathwayiUPA00114.

Protein family/group databases

CAZyiCBM36. Carbohydrate-Binding Module Family 36.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11Y_BACSP.

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xynYImported
OrganismiBacillus sp. YA-335Imported
Taxonomic identifieri72410 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727Sequence analysisAdd
BLAST
Chaini28 – 354327Endo-1,4-beta-xylanaseSequence analysisPRO_5004252437Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ59257.
SMRiQ59257. Positions 28-353.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 223196GH11 (glycosyl hydrolase family 11)InterPro annotationAdd
BLAST
Domaini237 – 354118CBM6 (carbohydrate binding type-6)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 11 (cellulase G) family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
InterProiIPR005084. CMB_fam6.
IPR013320. ConA-like_dom.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR001137. Glyco_hydro_11.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q59257-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQVKIMFLM TMVLGIGLLF FSENAEAAIT SNEIGTHDGY DYEFWKDSGG
60 70 80 90 100
SGSMTLNSGG TFSAQWSNVN NILFRKGKKF DETQTHQQIG NMSINYGATY
110 120 130 140 150
NPNGNSYLTV YGWTVDPLVE FYIVDSWGTW RPPGGTPKGT INVDGGTYQI
160 170 180 190 200
YETTRYNQPS IKGTATFQQY WSVRTSKRTS GTISVSEHFR AWESLGMNMG
210 220 230 240 250
NMYEVALTVE GYQSSGSANV YSNTLTIGGQ SGGEQATRVE AESMTKGGPY
260 270 280 290 300
TSNITSPFNG VALYANGDNV SFNHSFTKAN SSFSLRGASN NSNMARVDLR
310 320 330 340 350
IGGQNRGTFY FGDHYPAVYT INNVNHGTGN QLVELIVTAD DGTWDAYLDY

LEIR
Length:354
Mass (Da):38,935
Last modified:November 1, 1996 - v1
Checksum:i2F9424925EA9092F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59059 Genomic DNA. Translation: CAA41784.1.
PIRiS51779.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59059 Genomic DNA. Translation: CAA41784.1.
PIRiS51779.

3D structure databases

ProteinModelPortaliQ59257.
SMRiQ59257. Positions 28-353.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM36. Carbohydrate-Binding Module Family 36.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11Y_BACSP.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Enzyme and pathway databases

UniPathwayiUPA00114.

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
InterProiIPR005084. CMB_fam6.
IPR013320. ConA-like_dom.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR001137. Glyco_hydro_11.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Hyun Ju Y.
    Submitted (DEC-1990) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: YA-335Imported.
  2. "Nucleotide sequence and analysis of a xylanase gene (xynS) from alkali-tolerant Bacillus sp. YA-14 and comparison with other xylanases."
    Yu J.H., Park Y.S., Yum D.Y., Kim J.M., Kong I.S., Bai D.H.
    J. Microbiol. Biotechnol. 3:139-145(1993)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: YA-335Imported.

Entry informationi

Entry nameiQ59257_9BACI
AccessioniPrimary (citable) accession number: Q59257
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.