RPL6

Functionⁱ

Component of the large ribosomal subunit.By similarity

GO - Molecular functionⁱ

RNA binding Source: GO_Central
structural constituent of ribosome Source: GO_Central

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

cytoplasmic translation Source: UniProtKB
ribosomal large subunit assembly Source: GO_Central

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Ribonucleoprotein, Ribosomal protein

Molecular function

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

Reactomeⁱ	R-BTA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC). R-BTA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Reactomeⁱ

R-BTA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-BTA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: 60S ribosomal protein L6
Gene namesⁱ	Name:RPL6
Organismⁱ	Bos taurus (Bovine)
Taxonomic identifierⁱ	9913 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos
Proteomesⁱ	UP000009136 Componentⁱ: Chromosome 17

Keywords - Cellular componentⁱ

Cytoplasm, Endoplasmic reticulum

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000171007	1 – 287	60S ribosomal protein L6Add BLAST		287

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Cross-linkⁱ	5	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residueⁱ	93	N6-succinyllysineBy similarity	1
Modified residueⁱ	126	PhosphoserineBy similarity	1
Modified residueⁱ	206	N6-succinyllysineBy similarity	1
Modified residueⁱ	238	N6-acetyllysineBy similarity	1

Keywords - PTMⁱ

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbⁱ	Q58DQ3.
PeptideAtlas More...PeptideAtlasⁱ	Q58DQ3.
PRIDEⁱ	Q58DQ3.

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSBTAG00000031723.

Bgeeⁱ

ENSBTAG00000031723.

Interactionⁱ

Subunit structureⁱ

Component of the large ribosomal subunit (By similarity). May bind IPO9 with low affinity (By similarity).By similarity

Protein-protein interaction databases

STRINGⁱ	9913.ENSBTAP00000042411.

STRINGⁱ

9913.ENSBTAP00000042411.

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q58DQ3.
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Sequence similaritiesⁱ

Belongs to the eukaryotic ribosomal protein eL6 family.Curated

Phylogenomic databases

eggNOGⁱ	KOG1694. Eukaryota. COG2163. LUCA.
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00390000003682.
HOGENOMⁱ	HOG000207317.
HOVERGENⁱ	HBG002565.
InParanoidⁱ	Q58DQ3.
KEGG Orthology (KO) More...KOⁱ	K02934.
OMAⁱ	RKGDKPH.
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0L13.
TreeFamⁱ	TF300115.

Family and domain databases

Gene3Dⁱ	2.30.30.30. 1 hit.
InterProⁱ	View protein in InterPro IPR000915. 60S_ribosomal_L6E. IPR014722. Rib_L2_dom2. IPR005568. Ribosomal_L6_N. IPR008991. Translation_prot_SH3-like_sf.
PANTHERⁱ	PTHR10715. PTHR10715. 2 hits.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF01159. Ribosomal_L6e. 1 hit. PF03868. Ribosomal_L6e_N. 1 hit.
SUPFAMⁱ	SSF50104. SSF50104. 1 hit.
PROSITEⁱ	View protein in PROSITE PS01170. RIBOSOMAL_L6E. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

Q58DQ3-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MAGEKAEKPD TKEKKPEAKK ADAGKKAKKV EKVKKVKKGK PHCSRNPVLV 
        60         70         80         90        100
RGIGRYSRSA MYSRKALYKR KYSAAKSKVE KKKKVRVLAT VTKPVGGDKN 
       110        120        130        140        150
GGTRVVKLRK MPRYYPTEDV PRKLLSHGKK PFSKHVRKLR ASITPGTILI 
       160        170        180        190        200
ILTGRHRGKR VVFLKQLGSG LLLVTGPLSL NRVPLRRTHQ KFVIATSTKI 
       210        220        230        240        250
DISGVKIPEH LTDTYFKKKK LRKPRHQEGE IFDTEREKYE ITEQRKVDQK 
       260        270        280 
AVDSQILRRI KAVPQLQGYL RSVFALTNGI YPHKVVF

Length:287

Mass (Da):32,690

Last modified:January 23, 2007 - v3

Checksum:ⁱD3546817AB51C143

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	BT021543 mRNA. Translation: AAX46390.1. BT021544 mRNA. Translation: AAX46391.1. AY911360 mRNA. Translation: AAW82124.1. BC133430 mRNA. Translation: AAI33431.1.
NCBI Reference Sequences More...RefSeqⁱ	NP_001026926.1. NM_001031756.2. XP_005217842.1. XM_005217785.2. XP_005217843.1. XM_005217786.2.
UniGeneⁱ	Bt.62205.

Genome annotation databases

Ensemblⁱ	ENSBTAT00000033359; ENSBTAP00000042411; ENSBTAG00000031723.
GeneIDⁱ	511051.
KEGGⁱ	bta:511051.

Similar proteinsⁱ

100% Identity
90% Identity
50% Identity

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
Q58DQ3	L8HS41 Q30C42 UPI0006D94074	Bos mutus (wild yak) Sus scrofa (Pig)	287	UniRef100_Q58DQ3	Cluster: 60S ribosomal protein L6	4

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
Q58DQ3	L8HS41 Q30C42 UPI0006D94074 UPI000812CA40 UPI00075FCE9A UPI0007197936 A0A1S3WIW5 A0A1S3A3W9 UPI000454913A G3GU30 +30	Bos mutus (wild yak) Sus scrofa (Pig) Manis javanica (Malayan pangolin) (Sunda pangolin) Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey) Ceratotherium simum simum (southern white rhinoceros) Erinaceus europaeus (Western European hedgehog) Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) Oryctolagus cuniculus (Rabbit) Dipodomys ordii (Ord's kangaroo rat) Fukomys damarensis (Damaraland mole rat) (Cryptomys damarensis) And more	287	UniRef90_Q58DQ3	Cluster: 60S ribosomal protein L6	41

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
Q58DQ3	Q02878 A0A024RBK3 G2HJ36 G3QLG0 F8VZ45 A0A2J8MYK7 U3KQR5 A0A2J8MYI5 UPI000387BA78 UPI0004DC9828 +218	Homo sapiens (Human) Pan troglodytes (Chimpanzee) Gorilla gorilla gorilla (Western lowland gorilla) Oryctolagus cuniculus (Rabbit) Galeopterus variegatus (Malayan flying lemur) (Cynocephalus variegatus) Eptesicus fuscus (Big brown bat) (Vespertilio fuscus) Rhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana) Miniopterus natalensis (Natal long-fingered bat) (Miniopterus schreibersii natalensis) Microcebus murinus (Lesser mouse lemur) (Gray Mouse Lemur) Rhinopithecus bieti (Black snub-nosed monkey) (Pygathrix bieti) And more	288	UniRef50_Q02878	Cluster: 60S ribosomal protein L6	229

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	BT021543 mRNA. Translation: AAX46390.1. BT021544 mRNA. Translation: AAX46391.1. AY911360 mRNA. Translation: AAW82124.1. BC133430 mRNA. Translation: AAI33431.1.
NCBI Reference Sequences More...RefSeqⁱ	NP_001026926.1. NM_001031756.2. XP_005217842.1. XM_005217785.2. XP_005217843.1. XM_005217786.2.
UniGeneⁱ	Bt.62205.

3D structure databases

ProteinModelPortalⁱ	Q58DQ3.
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	9913.ENSBTAP00000042411.

STRINGⁱ

9913.ENSBTAP00000042411.

Proteomic databases

PaxDbⁱ	Q58DQ3.
PeptideAtlas More...PeptideAtlasⁱ	Q58DQ3.
PRIDEⁱ	Q58DQ3.

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSBTAT00000033359; ENSBTAP00000042411; ENSBTAG00000031723.
GeneIDⁱ	511051.
KEGGⁱ	bta:511051.

Organism-specific databases

CTDⁱ	6128.

CTDⁱ

6128.

Phylogenomic databases

eggNOGⁱ	KOG1694. Eukaryota. COG2163. LUCA.
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00390000003682.
HOGENOMⁱ	HOG000207317.
HOVERGENⁱ	HBG002565.
InParanoidⁱ	Q58DQ3.
KEGG Orthology (KO) More...KOⁱ	K02934.
OMAⁱ	RKGDKPH.
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0L13.
TreeFamⁱ	TF300115.

Enzyme and pathway databases

Reactomeⁱ	R-BTA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC). R-BTA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Reactomeⁱ

R-BTA-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-BTA-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

Bgeeⁱ	ENSBTAG00000031723.

Bgeeⁱ

ENSBTAG00000031723.

Family and domain databases

Gene3Dⁱ	2.30.30.30. 1 hit.
InterProⁱ	View protein in InterPro IPR000915. 60S_ribosomal_L6E. IPR014722. Rib_L2_dom2. IPR005568. Ribosomal_L6_N. IPR008991. Translation_prot_SH3-like_sf.
PANTHERⁱ	PTHR10715. PTHR10715. 2 hits.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF01159. Ribosomal_L6e. 1 hit. PF03868. Ribosomal_L6e_N. 1 hit.
SUPFAMⁱ	SSF50104. SSF50104. 1 hit.
PROSITEⁱ	View protein in PROSITE PS01170. RIBOSOMAL_L6E. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	RL6_BOVIN
Accessionⁱ	Q58DQ3Primary (citable) accession number: Q58DQ3 Secondary accession number(s): A3KMZ3
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	June 7, 2005
	Last sequence update:	January 23, 2007
	Last modified:	March 28, 2018
	This is version 91 of the entry and version 3 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q58DQ3 (RL6_BOVIN)

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60S ribosomal protein L6

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Cytosol

Endoplasmic reticulum

Other locations

Cytosol

Other locations

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Proteomic databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ