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Q58A45 (PAN3_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
PAB-dependent poly(A)-specific ribonuclease subunit 3

Short name=hPan3
Gene names
Name:PAN3
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length887 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Functions in cytoplasmic mRNA decay. As part of the Pan nuclease complex, recruits polyadenylate-binding protein which in turn stimulates PAN2 nuclease activity. Ref.5

Subunit structure

Interacts with PAN2 to form the Pan nuclease complex. Mediates the interaction of the Pan nuclease complex with polyadenylate-binding protein. Ref.5

Subcellular location

Cytoplasm Ref.5.

Domain

The protein kinase domain is predicted to be catalytically inactive.

Sequence similarities

Belongs to the protein kinase superfamily.

Contains 1 C3H1-type zinc finger.

Contains 1 protein kinase domain.

Sequence caution

The sequence AAI28180.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence ABK41888.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence BAC03632.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

The sequence CAI12449.2 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI12450.2 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAI14848.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence CAM20921.1 differs from that shown. Reason: Erroneous gene model prediction.

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q58A45-1)

Also known as: Pan3b;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q58A45-2)

The sequence of this isoform differs from the canonical sequence as follows:
     1-332: Missing.
     333-333: P → MKLTDSTKGWIVWAALDSSMR
Isoform 3 (identifier: Q58A45-3)

The sequence of this isoform differs from the canonical sequence as follows:
     231-284: Missing.
Isoform 4 (identifier: Q58A45-4)

The sequence of this isoform differs from the canonical sequence as follows:
     684-687: QADL → VSKN
     688-887: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 887887PAB-dependent poly(A)-specific ribonuclease subunit 3
PRO_0000280525

Regions

Domain492 – 754263Protein kinase
Zinc finger43 – 7129C3H1-type
Region1 – 491491Interaction with polyadenylate-binding protein
Region492 – 887396Interaction with PAN2

Natural variations

Alternative sequence1 – 332332Missing in isoform 2.
VSP_023753
Alternative sequence231 – 28454Missing in isoform 3.
VSP_023754
Alternative sequence3331P → MKLTDSTKGWIVWAALDSSM R in isoform 2.
VSP_023755
Alternative sequence684 – 6874QADL → VSKN in isoform 4.
VSP_041648
Alternative sequence688 – 887200Missing in isoform 4.
VSP_041649

Experimental info

Sequence conflict2291R → Q in BAD02262. Ref.5
Sequence conflict5691Y → H in AAI28181. Ref.4
Sequence conflict7931R → G in BAC03632. Ref.1
Sequence conflict8561D → G in BAD02262. Ref.5
Sequence conflict8561D → G in BAD93184. Ref.5

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 (Pan3b) [UniParc].

Last modified July 27, 2011. Version 3.
Checksum: 4883F859D2A642D2

FASTA88795,613
        10         20         30         40         50         60 
MNSGGGLPPP SAAASPSSSS LAAAVAVVAP PGVGGVPGGA AVGVKLKYCR YYAKDKTCFY 

        70         80         90        100        110        120 
GEECQFLHED PAAGAAPGLG LHSNSVPLAL AGAPVAGFPP GAVAGGGAGP PPGPKKPDLG 

       130        140        150        160        170        180 
DPGTGAAAGG GGSSGGLDGP RLAIPGMDGG ALTDTSLTDS YFSTSFIGVN GFGSPVETKY 

       190        200        210        220        230        240 
PLMQRMTNSS SSPSLLNDSA KPYSAHDPLT SPASSLFNDF GALNISQRRK PRKYRLGMLE 

       250        260        270        280        290        300 
ERLVPMGSKA RKAKNPIGCL ADRCKSGVPI NMVWWNRVTE NNLQTPNPTA SEFIPKGGST 

       310        320        330        340        350        360 
SRLSNVSQSN MSAFSQVFSH PSMGSPATAG LAPGMSLSAG SSPLHSPKIT PHTSPAPRRR 

       370        380        390        400        410        420 
SHTPNPASYM VPSSASTSVN NPVSQTPSSG QVIQKETVGG TTYFYTDTTP APLTGMVFPN 

       430        440        450        460        470        480 
YHIYPPTAPH VAYMQPKANA PSFFMADELR QELINRHLIT MAQIDQADMP AVPTEVDSYH 

       490        500        510        520        530        540 
SLFPLEPLPP PNRIQKSSNF GYITSCYKAV NSKDDLPYCL RRIHGFRLVN TKCMVLVDMW 

       550        560        570        580        590        600 
KKIQHSNIVT LREVFTTKAF AEPSLVFAYD FHAGGETMMS RHFNDPNADA YFTKRKWGQH 

       610        620        630        640        650        660 
EGPLPRQHAG LLPESLIWAY IVQLSSALRT IHTAGLACRV MDPTKILITG KTRLRVNCVG 

       670        680        690        700        710        720 
VFDVLTFDNS QNNNPLALMA QYQQADLISL GKVVLALACN SLAGIQRENL QKAMELVTIN 

       730        740        750        760        770        780 
YSSDLKNLIL YLLTDQNRMR SVNDIMPMIG ARFYTQLDAA QMRNDVIEED LAKEVQNGRL 

       790        800        810        820        830        840 
FRLLAKLGTI NERPEFQKDP TWSETGDRYL LKLFRDHLFH QVTEAGAPWI DLSHIISCLN 

       850        860        870        880 
KLDAGVPEKI SLISRDEKSV LVVTYSDLKR CFENTFQELI AAANGQL 

« Hide

Isoform 2 [UniParc].

Checksum: 8FF7B393A072FD8D
Show »

FASTA57564,465
Isoform 3 [UniParc].

Checksum: 06EAD23E1B205A4F
Show »

FASTA83389,405
Isoform 4 [UniParc].

Checksum: C3AFEB0807CE9F3B
Show »

FASTA68772,933

References

« Hide 'large scale' references
[1]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 754-887 (ISOFORMS 1/2/3).
Tissue: Skin fibroblast.
[2]SeattleSNPs variation discovery resource
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"The DNA sequence and analysis of human chromosome 13."
Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. expand/collapse author list , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.
Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[4]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 147-887 (ISOFORM 1).
Tissue: Uterus.
[5]"Identification of a human cytoplasmic poly(A) nuclease complex stimulated by poly(A)-binding protein."
Uchida N., Hoshino S., Katada T.
J. Biol. Chem. 279:1383-1391(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 147-887 (ISOFORMS 1 AND 3), FUNCTION, INTERACTION WITH PAN2 AND POLYADENYLATE-BINDING PROTEIN, SUBCELLULAR LOCATION.
Tissue: Cervix carcinoma.
[6]"The full-ORF clone resource of the German cDNA consortium."
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I.
BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 654-887 (ISOFORMS 1/2/3).
Tissue: Adrenal gland.
[7]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Tissue: Cervix carcinoma.

Web resources

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK091307 mRNA. Translation: BAC03632.1. Different initiation.
AK296435 mRNA. Translation: BAH12353.1.
EF088216 Genomic DNA. Translation: ABK41888.1. Sequence problems.
AL356915, AL138712 Genomic DNA. Translation: CAI12449.2. Sequence problems.
AL356915, AL138712 Genomic DNA. Translation: CAI12450.2. Sequence problems.
AL138712, AL356915 Genomic DNA. Translation: CAI14848.1. Sequence problems.
AL138712, AL356915 Genomic DNA. Translation: CAM20921.1. Sequence problems.
BC024318 mRNA. Translation: AAH24318.1.
BC128179 mRNA. Translation: AAI28180.1. Different initiation.
BC128180 mRNA. Translation: AAI28181.1.
AB107584 mRNA. Translation: BAD02262.1.
AB109552 mRNA. Translation: BAD93184.1.
BX647740 mRNA. Translation: CAI45987.2.
IPIIPI00513919.
IPI00829672.
IPI00954802.
IPI01022195.
RefSeqNP_787050.6. NM_175854.7.
UniGeneHs.645015.

3D structure databases

ProteinModelPortalQ58A45.
SMRQ58A45. Positions 493-650.
ModBaseSearch...

Protein-protein interaction databases

IntActQ58A45. 1 interaction.

PTM databases

PhosphoSiteQ58A45.

Polymorphism databases

DMDM134034989.

Proteomic databases

PaxDbQ58A45.
PRIDEQ58A45.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000282391; ENSP00000282391; ENSG00000152520.
ENST00000380958; ENSP00000370345; ENSG00000152520.
ENST00000399613; ENSP00000382522; ENSG00000152520.
GeneID255967.
KEGGhsa:255967.
UCSCuc001urx.3. human.
uc001ury.3. human.
uc001urz.3. human.
uc010tdo.1. human.

Organism-specific databases

CTD255967.
GeneCardsGC13P028713.
H-InvDBHIX0011200.
HGNCHGNC:29991. PAN3.
HPAHPA028817.
neXtProtNX_Q58A45.
PharmGKBPA144596398.
GenAtlasSearch...

Phylogenomic databases

eggNOGNOG260889.
HOVERGENHBG058849.
InParanoidQ58A45.
KOK12572.
OMAYYAKDKT.
OrthoDBEOG4K9BBK.

Enzyme and pathway databases

ReactomeREACT_21257. Metabolism of RNA.
REACT_71. Gene Expression.

Gene expression databases

ArrayExpressQ58A45.
BgeeQ58A45.
CleanExHS_PAN3.
GenevestigatorQ58A45.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_cat_dom.
IPR000571. Znf_CCCH.
[Graphical view]
SMARTSM00356. ZnF_C3H1. 1 hit.
[Graphical view]
SUPFAMSSF56112. Kinase_like. 1 hit.
PROSITEPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS50103. ZF_C3H1. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSPAN3. human.
GenomeRNAi255967.
NextBio92689.

Entry information

Entry namePAN3_HUMAN
AccessionPrimary (citable) accession number: Q58A45
Secondary accession number(s): A0N0X1 expand/collapse secondary AC list , A1A4Y8, A1A4Y9, B1ALF1, B7Z3W7, Q0D2P2, Q5HYG6, Q5T515, Q5T516, Q5TBA0, Q76E13, Q8NBA6
Entry history
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: July 27, 2011
Last modified: May 1, 2013
This is version 75 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human and mouse protein kinases

Human and mouse protein kinases: classification and index

Human chromosome 13

Human chromosome 13: entries, gene names and cross-references to MIM

SIMILARITY comments

Index of protein domains and families