Q58A45 (PAN3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 75.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: PAB-dependent poly(A)-specific ribonuclease subunit 3 Short name=hPan3 | ||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 887 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Functions in cytoplasmic mRNA decay. As part of the Pan nuclease complex, recruits polyadenylate-binding protein which in turn stimulates PAN2 nuclease activity. Ref.5 |
| Subunit structure | Interacts with PAN2 to form the Pan nuclease complex. Mediates the interaction of the Pan nuclease complex with polyadenylate-binding protein. Ref.5 |
| Subcellular location | |
| Domain | The protein kinase domain is predicted to be catalytically inactive. |
| Sequence similarities | Belongs to the protein kinase superfamily. Contains 1 C3H1-type zinc finger. Contains 1 protein kinase domain. |
| Sequence caution | The sequence AAI28180.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence ABK41888.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAC03632.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence CAI12449.2 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI12450.2 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI14848.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAM20921.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q58A45-1) Also known as: Pan3b; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q58A45-2) The sequence of this isoform differs from the canonical sequence as follows: 1-332: Missing. 333-333: P → MKLTDSTKGWIVWAALDSSMR | ||||||
| Isoform 3 (identifier: Q58A45-3) The sequence of this isoform differs from the canonical sequence as follows: 231-284: Missing. | ||||||
| Isoform 4 (identifier: Q58A45-4) The sequence of this isoform differs from the canonical sequence as follows: 684-687: QADL → VSKN 688-887: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 887 | 887 | PAB-dependent poly(A)-specific ribonuclease subunit 3 | PRO_0000280525 | |||||
Regions | |||||||||
| Domain | 492 – 754 | 263 | Protein kinase | ||||||
| Zinc finger | 43 – 71 | 29 | C3H1-type | ||||||
| Region | 1 – 491 | 491 | Interaction with polyadenylate-binding protein | ||||||
| Region | 492 – 887 | 396 | Interaction with PAN2 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 332 | 332 | Missing in isoform 2. | VSP_023753 | |||||
| Alternative sequence | 231 – 284 | 54 | Missing in isoform 3. | VSP_023754 | |||||
| Alternative sequence | 333 | 1 | P → MKLTDSTKGWIVWAALDSSM R in isoform 2. | VSP_023755 | |||||
| Alternative sequence | 684 – 687 | 4 | QADL → VSKN in isoform 4. | VSP_041648 | |||||
| Alternative sequence | 688 – 887 | 200 | Missing in isoform 4. | VSP_041649 | |||||
Experimental info | |||||||||
| Sequence conflict | 229 | 1 | R → Q in BAD02262. Ref.5 | ||||||
| Sequence conflict | 569 | 1 | Y → H in AAI28181. Ref.4 | ||||||
| Sequence conflict | 793 | 1 | R → G in BAC03632. Ref.1 | ||||||
| Sequence conflict | 856 | 1 | D → G in BAD02262. Ref.5 | ||||||
| Sequence conflict | 856 | 1 | D → G in BAD93184. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 754-887 (ISOFORMS 1/2/3). Tissue: Skin fibroblast. |
| [2] | SeattleSNPs variation discovery resource Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [3] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 147-887 (ISOFORM 1). Tissue: Uterus. |
| [5] | "Identification of a human cytoplasmic poly(A) nuclease complex stimulated by poly(A)-binding protein." Uchida N., Hoshino S., Katada T. J. Biol. Chem. 279:1383-1391(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 147-887 (ISOFORMS 1 AND 3), FUNCTION, INTERACTION WITH PAN2 AND POLYADENYLATE-BINDING PROTEIN, SUBCELLULAR LOCATION. Tissue: Cervix carcinoma. |
| [6] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 654-887 (ISOFORMS 1/2/3). Tissue: Adrenal gland. |
| [7] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK091307 mRNA. Translation: BAC03632.1. Different initiation. AK296435 mRNA. Translation: BAH12353.1. EF088216 Genomic DNA. Translation: ABK41888.1. Sequence problems. AL356915, AL138712 Genomic DNA. Translation: CAI12449.2. Sequence problems. AL356915, AL138712 Genomic DNA. Translation: CAI12450.2. Sequence problems. AL138712, AL356915 Genomic DNA. Translation: CAI14848.1. Sequence problems. AL138712, AL356915 Genomic DNA. Translation: CAM20921.1. Sequence problems. BC024318 mRNA. Translation: AAH24318.1. BC128179 mRNA. Translation: AAI28180.1. Different initiation. BC128180 mRNA. Translation: AAI28181.1. AB107584 mRNA. Translation: BAD02262.1. AB109552 mRNA. Translation: BAD93184.1. BX647740 mRNA. Translation: CAI45987.2. |
| IPI | IPI00513919. IPI00829672. IPI00954802. IPI01022195. |
| RefSeq | NP_787050.6. NM_175854.7. |
| UniGene | Hs.645015. |
3D structure databases | |
| ProteinModelPortal | Q58A45. |
| SMR | Q58A45. Positions 493-650. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q58A45. 1 interaction. |
PTM databases | |
| PhosphoSite | Q58A45. |
Polymorphism databases | |
| DMDM | 134034989. |
Proteomic databases | |
| PaxDb | Q58A45. |
| PRIDE | Q58A45. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000282391; ENSP00000282391; ENSG00000152520. ENST00000380958; ENSP00000370345; ENSG00000152520. ENST00000399613; ENSP00000382522; ENSG00000152520. |
| GeneID | 255967. |
| KEGG | hsa:255967. |
| UCSC | uc001urx.3. human. uc001ury.3. human. uc001urz.3. human. uc010tdo.1. human. |
Organism-specific databases | |
| CTD | 255967. |
| GeneCards | GC13P028713. |
| H-InvDB | HIX0011200. |
| HGNC | HGNC:29991. PAN3. |
| HPA | HPA028817. |
| neXtProt | NX_Q58A45. |
| PharmGKB | PA144596398. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG260889. |
| HOVERGEN | HBG058849. |
| InParanoid | Q58A45. |
| KO | K12572. |
| OMA | YYAKDKT. |
| OrthoDB | EOG4K9BBK. |
Enzyme and pathway databases | |
| Reactome | REACT_21257. Metabolism of RNA. REACT_71. Gene Expression. |
Gene expression databases | |
| ArrayExpress | Q58A45. |
| Bgee | Q58A45. |
| CleanEx | HS_PAN3. |
| Genevestigator | Q58A45. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR000571. Znf_CCCH. [Graphical view] |
| SMART | SM00356. ZnF_C3H1. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS50011. PROTEIN_KINASE_DOM. 1 hit. PS50103. ZF_C3H1. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PAN3. human. |
| GenomeRNAi | 255967. |
| NextBio | 92689. |
Entry information
| Entry name | PAN3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q58A45 Secondary accession number(s): A0N0X1 Q8NBA6 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| SIMILARITY comments Index of protein domains and families |

Clusters with
