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Protein

UPF0201 protein MJ1564

Gene

MJ1564

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0201 protein MJ1564
Gene namesi
Ordered Locus Names:MJ1564
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000945101 – 170UPF0201 protein MJ1564Add BLAST170

Proteomic databases

PRIDEiQ58959.

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1564.

Structurei

Secondary structure

1170
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 9Combined sources8
Helixi15 – 25Combined sources11
Beta strandi30 – 35Combined sources6
Beta strandi41 – 48Combined sources8
Helixi51 – 59Combined sources9
Helixi63 – 72Combined sources10
Beta strandi76 – 83Combined sources8
Helixi85 – 89Combined sources5
Beta strandi103 – 108Combined sources6
Helixi115 – 122Combined sources8
Beta strandi126 – 129Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PZZX-ray2.20A/B/C/D2-139[»]
ProteinModelPortaliQ58959.
SMRiQ58959.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ58959.

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi134 – 156Glu-richAdd BLAST23

Sequence similaritiesi

Belongs to the UPF0201 family.Curated

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
InParanoidiQ58959.
KOiK09736.
OMAiFDIDTHG.
PhylomeDBiQ58959.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201. 1 hit.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.

Sequencei

Sequence statusi: Complete.

Q58959-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEVIIKAKVK PTEDKYKVKK AILNIFPKAK LTFIEKDNEF GEWEGKTKSV
60 70 80 90 100
EKLKELLRSQ SILDAARMVL EKGMTENATK FYLNKQAAYV GAVNFDIDTH
110 120 130 140 150
GGIFVKILAD ENEDIMKIIK DIAPRTKGGV IINEDELEEE EEKEDSEEIK
160 170
EGHKEENNLK IKVIDNSSGD
Length:170
Mass (Da):19,330
Last modified:November 1, 1996 - v1
Checksum:iF857091593FE494F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99591.1.
PIRiC64495.
RefSeqiWP_010871088.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB99591; AAB99591; MJ_1564.
GeneIDi1452472.
KEGGimja:MJ_1564.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99591.1.
PIRiC64495.
RefSeqiWP_010871088.1. NC_000909.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PZZX-ray2.20A/B/C/D2-139[»]
ProteinModelPortaliQ58959.
SMRiQ58959.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_1564.

Proteomic databases

PRIDEiQ58959.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99591; AAB99591; MJ_1564.
GeneIDi1452472.
KEGGimja:MJ_1564.

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
InParanoidiQ58959.
KOiK09736.
OMAiFDIDTHG.
PhylomeDBiQ58959.

Miscellaneous databases

EvolutionaryTraceiQ58959.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201. 1 hit.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY1564_METJA
AccessioniPrimary (citable) accession number: Q58959
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.