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Protein

Putative HTH-type transcriptional regulator MJ1563

Gene

MJ1563

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi44 – 68H-T-H motifPROSITE-ProRule annotationAdd BLAST25

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator MJ1563
Alternative name(s):
DNA-binding protein MJ1563
Gene namesi
Ordered Locus Names:MJ1563
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001606371 – 152Putative HTH-type transcriptional regulator MJ1563Add BLAST152

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1563.

Structurei

Secondary structure

1152
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 21Combined sources19
Helixi26 – 37Combined sources12
Helixi44 – 51Combined sources8
Helixi55 – 67Combined sources13
Beta strandi70 – 74Combined sources5
Beta strandi83 – 86Combined sources4
Helixi89 – 117Combined sources29
Helixi123 – 133Combined sources11
Helixi135 – 145Combined sources11
Helixi146 – 149Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KU9X-ray2.80A/B1-152[»]
ProteinModelPortaliQ58958.
SMRiQ58958.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ58958.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 106HTH arsR-typePROSITE-ProRule annotationAdd BLAST100

Sequence similaritiesi

Belongs to the GbsR family.Curated
Contains 1 HTH arsR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiarCOG02795. Archaea.
COG1510. LUCA.
InParanoidiQ58958.
OMAiHGLNKSV.
PhylomeDBiQ58958.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001845. HTH_ArsR_DNA-bd_dom.
IPR026282. MJ1563.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01022. HTH_5. 1 hit.
[Graphical view]
PIRSFiPIRSF006707. MJ1563. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50987. HTH_ARSR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q58958-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIIMEEAKKL IIELFSELAK IHGLNKSVGA VYAILYLSDK PLTISDIMEE
60 70 80 90 100
LKISKGNVSM SLKKLEELGF VRKVWIKGER KNYYEAVDGF SSIKDIAKRK
110 120 130 140 150
HDLIAKTYED LKKLEEKCNE EEKEFIKQKI KGIERMKKIS EKILEALNDL

DN
Length:152
Mass (Da):17,609
Last modified:November 1, 1996 - v1
Checksum:iABD121B907F4271A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99584.1.
PIRiB64495.

Genome annotation databases

EnsemblBacteriaiAAB99584; AAB99584; MJ_1563.
KEGGimja:MJ_1563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99584.1.
PIRiB64495.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KU9X-ray2.80A/B1-152[»]
ProteinModelPortaliQ58958.
SMRiQ58958.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_1563.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99584; AAB99584; MJ_1563.
KEGGimja:MJ_1563.

Phylogenomic databases

eggNOGiarCOG02795. Archaea.
COG1510. LUCA.
InParanoidiQ58958.
OMAiHGLNKSV.
PhylomeDBiQ58958.

Miscellaneous databases

EvolutionaryTraceiQ58958.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001845. HTH_ArsR_DNA-bd_dom.
IPR026282. MJ1563.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01022. HTH_5. 1 hit.
[Graphical view]
PIRSFiPIRSF006707. MJ1563. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50987. HTH_ARSR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1563_METJA
AccessioniPrimary (citable) accession number: Q58958
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.