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Protein

Putative HTH-type transcriptional regulator MJ1563

Gene

MJ1563

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi44 – 68H-T-H motifPROSITE-ProRule annotationAdd BLAST25

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator MJ1563
Alternative name(s):
DNA-binding protein MJ1563
Gene namesi
Ordered Locus Names:MJ1563
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001606371 – 152Putative HTH-type transcriptional regulator MJ1563Add BLAST152

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1563

Structurei

Secondary structure

1152
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 21Combined sources19
Helixi26 – 37Combined sources12
Helixi44 – 51Combined sources8
Helixi55 – 67Combined sources13
Beta strandi70 – 74Combined sources5
Beta strandi83 – 86Combined sources4
Helixi89 – 117Combined sources29
Helixi123 – 133Combined sources11
Helixi135 – 145Combined sources11
Helixi146 – 149Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1KU9X-ray2.80A/B1-152[»]
ProteinModelPortaliQ58958
SMRiQ58958
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ58958

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 106HTH arsR-typePROSITE-ProRule annotationAdd BLAST100

Sequence similaritiesi

Belongs to the GbsR family.Curated

Phylogenomic databases

eggNOGiarCOG02795 Archaea
COG1510 LUCA
InParanoidiQ58958
OMAiKVWIKGE
OrthoDBiPOG093Z0FAR
PhylomeDBiQ58958

Family and domain databases

CDDicd00090 HTH_ARSR, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR011991 ArsR-like_HTH
IPR001845 HTH_ArsR_DNA-bd_dom
IPR026282 MJ1563
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF01022 HTH_5, 1 hit
PIRSFiPIRSF006707 MJ1563, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50987 HTH_ARSR_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q58958-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIIMEEAKKL IIELFSELAK IHGLNKSVGA VYAILYLSDK PLTISDIMEE
60 70 80 90 100
LKISKGNVSM SLKKLEELGF VRKVWIKGER KNYYEAVDGF SSIKDIAKRK
110 120 130 140 150
HDLIAKTYED LKKLEEKCNE EEKEFIKQKI KGIERMKKIS EKILEALNDL

DN
Length:152
Mass (Da):17,609
Last modified:November 1, 1996 - v1
Checksum:iABD121B907F4271A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA Translation: AAB99584.1
PIRiB64495

Genome annotation databases

EnsemblBacteriaiAAB99584; AAB99584; MJ_1563
KEGGimja:MJ_1563

Similar proteinsi

Entry informationi

Entry nameiY1563_METJA
AccessioniPrimary (citable) accession number: Q58958
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

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