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Protein

Uncharacterized KH and PIN-domain containing protein MJ1533

Gene

MJ1533

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Mg2+Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi15MagnesiumSequence analysis1
Metal bindingi118MagnesiumSequence analysis1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding, RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized KH and PIN-domain containing protein MJ1533
Gene namesi
Ordered Locus Names:MJ1533
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000501661 – 642Uncharacterized KH and PIN-domain containing protein MJ1533Add BLAST642

Proteomic databases

PRIDEiQ58928.

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1533.

Structurei

Secondary structure

1642
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi28 – 31Combined sources4
Helixi33 – 37Combined sources5
Helixi40 – 46Combined sources7
Turni47 – 52Combined sources6
Beta strandi54 – 58Combined sources5
Helixi59 – 69Combined sources11
Turni70 – 72Combined sources3
Helixi74 – 92Combined sources19
Beta strandi97 – 101Combined sources5
Helixi106 – 110Combined sources5
Beta strandi114 – 116Combined sources3
Helixi117 – 127Combined sources11
Beta strandi131 – 135Combined sources5
Helixi137 – 145Combined sources9
Beta strandi150 – 152Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3I8OX-ray2.64A27-165[»]
ProteinModelPortaliQ58928.
SMRiQ58928.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ58928.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 149PINcAdd BLAST121
Domaini510 – 578KHPROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

In the N-terminal section; belongs to the PINc/VapC protein family.Curated
Contains 1 KH domain.PROSITE-ProRule annotation
Contains 1 PINc domain.Curated

Phylogenomic databases

eggNOGiarCOG04116. Archaea.
COG1855. LUCA.
InParanoidiQ58928.
KOiK06865.
OMAiSLIIQHK.
PhylomeDBiQ58928.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
3.40.50.1010. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR009019. KH_prok-type.
IPR027417. P-loop_NTPase.
IPR002716. PIN_dom.
IPR029060. PIN_domain-like.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00013. KH_1. 1 hit.
PF01850. PIN. 1 hit.
PF00437. T2SSE. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00670. PINc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF54814. SSF54814. 1 hit.
SSF88723. SSF88723. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q58928-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVTFMNLEE RKKLETKSID ELDLIGKKVC VDTCVVIDGR ITELIERGKL
60 70 80 90 100
KDATIIIPEA VVSELEYQAN MGREIGYKGI EELRKLIEKA SEHNIKVEYY
110 120 130 140 150
GERPTREEIF LAKSGEIDAM IRKVAKETNS ILLTSDWIQY NLAKAQGIEA
160 170 180 190 200
YFLEAAEEEV ELVLDKYFDE ETMSVHLKEG CLPYAKKGKP GEVKLVPIGD
210 220 230 240 250
KELTKEEMED IIDNIIKYAE QNNGFFEIQR KGATVIQLGN IRISIARPPF
260 270 280 290 300
SEALEVTAVR PVVKASLEDY ELSDKLMERL KERAEGIFVS GPPGSGKSTF
310 320 330 340 350
VAALAEFYRS QGKIVKTMES PRDLQVSKEI TQYAPLEGDM EKTCDILLLV
360 370 380 390 400
RPDYTIYDEV RKTRDFEIFA DMRMAGVGMV GVVHASKPID AIQRLIGRVE
410 420 430 440 450
LGVIPQVVDT VIFIKDGKIQ KVYEIDFTVK VPYGMVEEDL ARPVIEVKDF
460 470 480 490 500
ETGRVEYEIY TYGEQVVVMP IKEEGGKKAP IYGYAEEKLE EILKKLLPRK
510 520 530 540 550
AKPMVKVTGD NSIDLIVPEK YIGAIIGKGG KEISKLEDML GLKISVKEKE
560 570 580 590 600
KEEEKDMERI YRKYEYVNEL ESTRIYETDK YVVVDVGEDF AGENIRIYID
610 620 630 640
GKLLTTVTVR NDGTVRINKK TKVGKEILEA IDEGRDIYVD LQ
Length:642
Mass (Da):72,907
Last modified:November 1, 1996 - v1
Checksum:i9CA730BFA10ABE69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99554.1.
PIRiD64491.

Genome annotation databases

EnsemblBacteriaiAAB99554; AAB99554; MJ_1533.
KEGGimja:MJ_1533.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99554.1.
PIRiD64491.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3I8OX-ray2.64A27-165[»]
ProteinModelPortaliQ58928.
SMRiQ58928.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_1533.

Proteomic databases

PRIDEiQ58928.

Protocols and materials databases

DNASUi1452441.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99554; AAB99554; MJ_1533.
KEGGimja:MJ_1533.

Phylogenomic databases

eggNOGiarCOG04116. Archaea.
COG1855. LUCA.
InParanoidiQ58928.
KOiK06865.
OMAiSLIIQHK.
PhylomeDBiQ58928.

Miscellaneous databases

EvolutionaryTraceiQ58928.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
3.40.50.1010. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR009019. KH_prok-type.
IPR027417. P-loop_NTPase.
IPR002716. PIN_dom.
IPR029060. PIN_domain-like.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00013. KH_1. 1 hit.
PF01850. PIN. 1 hit.
PF00437. T2SSE. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00670. PINc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF54814. SSF54814. 1 hit.
SSF88723. SSF88723. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1533_METJA
AccessioniPrimary (citable) accession number: Q58928
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2004
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.