Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized KH and PIN-domain containing protein MJ1533

Gene

MJ1533

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Cofactori

Mg2+Curated

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi15 – 151MagnesiumSequence analysis
Metal bindingi118 – 1181MagnesiumSequence analysis

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding, RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized KH and PIN-domain containing protein MJ1533
Gene namesi
Ordered Locus Names:MJ1533
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 642642Uncharacterized KH and PIN-domain containing protein MJ1533PRO_0000050166Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1533.

Structurei

Secondary structure

1
642
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi28 – 314Combined sources
Helixi33 – 375Combined sources
Helixi40 – 467Combined sources
Turni47 – 526Combined sources
Beta strandi54 – 585Combined sources
Helixi59 – 6911Combined sources
Turni70 – 723Combined sources
Helixi74 – 9219Combined sources
Beta strandi97 – 1015Combined sources
Helixi106 – 1105Combined sources
Beta strandi114 – 1163Combined sources
Helixi117 – 12711Combined sources
Beta strandi131 – 1355Combined sources
Helixi137 – 1459Combined sources
Beta strandi150 – 1523Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3I8OX-ray2.64A27-165[»]
ProteinModelPortaliQ58928.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ58928.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 149121PINcAdd
BLAST
Domaini510 – 57869KHPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

In the N-terminal section; belongs to the PINc/VapC protein family.Curated
Contains 1 KH domain.PROSITE-ProRule annotation
Contains 1 PINc domain.Curated

Phylogenomic databases

eggNOGiarCOG04116. Archaea.
COG1855. LUCA.
InParanoidiQ58928.
KOiK06865.
OMAiSLIIQHK.
PhylomeDBiQ58928.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
3.40.50.1010. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR009019. KH_prok-type.
IPR027417. P-loop_NTPase.
IPR002716. PIN_dom.
IPR029060. PIN_domain-like.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00013. KH_1. 1 hit.
PF01850. PIN. 1 hit.
PF00437. T2SSE. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00670. PINc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF54814. SSF54814. 1 hit.
SSF88723. SSF88723. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q58928-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVTFMNLEE RKKLETKSID ELDLIGKKVC VDTCVVIDGR ITELIERGKL
60 70 80 90 100
KDATIIIPEA VVSELEYQAN MGREIGYKGI EELRKLIEKA SEHNIKVEYY
110 120 130 140 150
GERPTREEIF LAKSGEIDAM IRKVAKETNS ILLTSDWIQY NLAKAQGIEA
160 170 180 190 200
YFLEAAEEEV ELVLDKYFDE ETMSVHLKEG CLPYAKKGKP GEVKLVPIGD
210 220 230 240 250
KELTKEEMED IIDNIIKYAE QNNGFFEIQR KGATVIQLGN IRISIARPPF
260 270 280 290 300
SEALEVTAVR PVVKASLEDY ELSDKLMERL KERAEGIFVS GPPGSGKSTF
310 320 330 340 350
VAALAEFYRS QGKIVKTMES PRDLQVSKEI TQYAPLEGDM EKTCDILLLV
360 370 380 390 400
RPDYTIYDEV RKTRDFEIFA DMRMAGVGMV GVVHASKPID AIQRLIGRVE
410 420 430 440 450
LGVIPQVVDT VIFIKDGKIQ KVYEIDFTVK VPYGMVEEDL ARPVIEVKDF
460 470 480 490 500
ETGRVEYEIY TYGEQVVVMP IKEEGGKKAP IYGYAEEKLE EILKKLLPRK
510 520 530 540 550
AKPMVKVTGD NSIDLIVPEK YIGAIIGKGG KEISKLEDML GLKISVKEKE
560 570 580 590 600
KEEEKDMERI YRKYEYVNEL ESTRIYETDK YVVVDVGEDF AGENIRIYID
610 620 630 640
GKLLTTVTVR NDGTVRINKK TKVGKEILEA IDEGRDIYVD LQ
Length:642
Mass (Da):72,907
Last modified:November 1, 1996 - v1
Checksum:i9CA730BFA10ABE69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99554.1.
PIRiD64491.

Genome annotation databases

EnsemblBacteriaiAAB99554; AAB99554; MJ_1533.
KEGGimja:MJ_1533.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99554.1.
PIRiD64491.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3I8OX-ray2.64A27-165[»]
ProteinModelPortaliQ58928.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_1533.

Protocols and materials databases

DNASUi1452441.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99554; AAB99554; MJ_1533.
KEGGimja:MJ_1533.

Phylogenomic databases

eggNOGiarCOG04116. Archaea.
COG1855. LUCA.
InParanoidiQ58928.
KOiK06865.
OMAiSLIIQHK.
PhylomeDBiQ58928.

Miscellaneous databases

EvolutionaryTraceiQ58928.

Family and domain databases

Gene3Di3.30.1370.10. 1 hit.
3.40.50.1010. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR009019. KH_prok-type.
IPR027417. P-loop_NTPase.
IPR002716. PIN_dom.
IPR029060. PIN_domain-like.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00013. KH_1. 1 hit.
PF01850. PIN. 1 hit.
PF00437. T2SSE. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
SM00670. PINc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF54814. SSF54814. 1 hit.
SSF88723. SSF88723. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1533_METJA
AccessioniPrimary (citable) accession number: Q58928
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2004
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.