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Protein

UPF0251 protein MJ1243

Gene

MJ1243

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: InterPro

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0251 protein MJ1243
Gene namesi
Ordered Locus Names:MJ1243
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 123123UPF0251 protein MJ1243PRO_0000147576Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ1243.

Structurei

3D structure databases

ProteinModelPortaliQ58640.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0251 family.Curated

Phylogenomic databases

eggNOGiCOG1342.
InParanoidiQ58640.
KOiK06933.
OMAiLYSARYK.
PhylomeDBiQ58640.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00674. UPF0251.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR002852. UPF0251.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02001. DUF134. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.

Sequencei

Sequence statusi: Complete.

Q58640-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRRGRPKIP RFISEEPKFR IFKPHGVSLT EVDKVILSVD ELEAIRLVDY
60 70 80 90 100
LDYTQEEASK LMGISRRVLW SLLTEGRKKI ADALINGKAI VIEGGEYKIR
110 120
ECGFCMRHRF GIKKHCRTWR EEL
Length:123
Mass (Da):14,391
Last modified:November 1, 1996 - v1
Checksum:i2DC553451B5E1F19
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99248.1.
PIRiB64455.
RefSeqiNP_248238.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB99248; AAB99248; MJ_1243.
GeneIDi1452139.
KEGGimja:MJ_1243.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99248.1.
PIRiB64455.
RefSeqiNP_248238.1. NC_000909.1.

3D structure databases

ProteinModelPortaliQ58640.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ1243.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99248; AAB99248; MJ_1243.
GeneIDi1452139.
KEGGimja:MJ_1243.

Phylogenomic databases

eggNOGiCOG1342.
InParanoidiQ58640.
KOiK06933.
OMAiLYSARYK.
PhylomeDBiQ58640.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00674. UPF0251.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR002852. UPF0251.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02001. DUF134. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

Entry informationi

Entry nameiY1243_METJA
AccessioniPrimary (citable) accession number: Q58640
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2003
Last sequence update: November 1, 1996
Last modified: April 1, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.