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Q58640

- Y1243_METJA

UniProt

Q58640 - Y1243_METJA

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Protein
UPF0251 protein MJ1243
Gene
MJ1243
Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: InterPro

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0251 protein MJ1243
Gene namesi
Ordered Locus Names:MJ1243
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 123123UPF0251 protein MJ1243UniRule annotation
PRO_0000147576Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ1243.

Structurei

3D structure databases

ProteinModelPortaliQ58640.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0251 family.

Phylogenomic databases

eggNOGiCOG1342.
KOiK06933.
OMAiKIRECGF.
PhylomeDBiQ58640.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00674. UPF0251.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR002852. UPF0251.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02001. DUF134. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.

Sequencei

Sequence statusi: Complete.

Q58640-1 [UniParc]FASTAAdd to Basket

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MSRRGRPKIP RFISEEPKFR IFKPHGVSLT EVDKVILSVD ELEAIRLVDY    50
LDYTQEEASK LMGISRRVLW SLLTEGRKKI ADALINGKAI VIEGGEYKIR 100
ECGFCMRHRF GIKKHCRTWR EEL 123
Length:123
Mass (Da):14,391
Last modified:November 1, 1996 - v1
Checksum:i2DC553451B5E1F19
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB99248.1.
PIRiB64455.
RefSeqiNP_248238.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB99248; AAB99248; MJ_1243.
GeneIDi1452139.
KEGGimja:MJ_1243.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB99248.1 .
PIRi B64455.
RefSeqi NP_248238.1. NC_000909.1.

3D structure databases

ProteinModelPortali Q58640.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243232.MJ1243.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB99248 ; AAB99248 ; MJ_1243 .
GeneIDi 1452139.
KEGGi mja:MJ_1243.

Phylogenomic databases

eggNOGi COG1342.
KOi K06933.
OMAi KIRECGF.
PhylomeDBi Q58640.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
HAMAPi MF_00674. UPF0251.
InterProi IPR013324. RNA_pol_sigma_r3_r4.
IPR002852. UPF0251.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF02001. DUF134. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

Entry informationi

Entry nameiY1243_METJA
AccessioniPrimary (citable) accession number: Q58640
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2003
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi