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Q58640

- Y1243_METJA

UniProt

Q58640 - Y1243_METJA

Protein

UPF0251 protein MJ1243

Gene

MJ1243

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: InterPro

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0251 protein MJ1243
    Gene namesi
    Ordered Locus Names:MJ1243
    OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
    Taxonomic identifieri243232 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
    ProteomesiUP000000805: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 123123UPF0251 protein MJ1243PRO_0000147576Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi243232.MJ1243.

    Structurei

    3D structure databases

    ProteinModelPortaliQ58640.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the UPF0251 family.Curated

    Phylogenomic databases

    eggNOGiCOG1342.
    KOiK06933.
    OMAiKIRECGF.
    PhylomeDBiQ58640.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    HAMAPiMF_00674. UPF0251.
    InterProiIPR013324. RNA_pol_sigma_r3_r4.
    IPR002852. UPF0251.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF02001. DUF134. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q58640-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSRRGRPKIP RFISEEPKFR IFKPHGVSLT EVDKVILSVD ELEAIRLVDY    50
    LDYTQEEASK LMGISRRVLW SLLTEGRKKI ADALINGKAI VIEGGEYKIR 100
    ECGFCMRHRF GIKKHCRTWR EEL 123
    Length:123
    Mass (Da):14,391
    Last modified:November 1, 1996 - v1
    Checksum:i2DC553451B5E1F19
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L77117 Genomic DNA. Translation: AAB99248.1.
    PIRiB64455.
    RefSeqiNP_248238.1. NC_000909.1.

    Genome annotation databases

    EnsemblBacteriaiAAB99248; AAB99248; MJ_1243.
    GeneIDi1452139.
    KEGGimja:MJ_1243.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L77117 Genomic DNA. Translation: AAB99248.1 .
    PIRi B64455.
    RefSeqi NP_248238.1. NC_000909.1.

    3D structure databases

    ProteinModelPortali Q58640.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 243232.MJ1243.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB99248 ; AAB99248 ; MJ_1243 .
    GeneIDi 1452139.
    KEGGi mja:MJ_1243.

    Phylogenomic databases

    eggNOGi COG1342.
    KOi K06933.
    OMAi KIRECGF.
    PhylomeDBi Q58640.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    HAMAPi MF_00674. UPF0251.
    InterProi IPR013324. RNA_pol_sigma_r3_r4.
    IPR002852. UPF0251.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF02001. DUF134. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

    Entry informationi

    Entry nameiY1243_METJA
    AccessioniPrimary (citable) accession number: Q58640
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 11, 2003
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Methanococcus jannaschii
      Methanococcus jannaschii: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families
    3. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries

    External Data

    Dasty 3