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Q585J5

- Q585J5_TRYB2

UniProt

Q585J5 - Q585J5_TRYB2

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Protein
Submitted name: 60S ribosomal protein L13a, putative
Gene
Tb927.4.3550, Tb927.5.1610
Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L13a, putativeImported
Gene namesi
ORF Names:Tb927.4.3550Imported, Tb927.5.1610Imported
OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)
Taxonomic identifieri999953 [NCBI]
Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
ProteomesiUP000008524: Chromosome 4, UP000008524: Chromosome 5

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZF7electron microscopy5.57O1-222[»]

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0102.
HOGENOMiHOG000225289.
KOiK02872.
OMAiNCYRNER.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
InterProiIPR005822. Ribosomal_L13.
IPR023564. Ribosomal_L13_dom.
IPR005755. Ribosomal_L13_euk/arc.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF3. PTHR11545:SF3. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q585J5-1 [UniParc]FASTAAdd to Basket

« Hide

MVLPSRRSLN RSSRKGFKKH RPDIIVIDLK DHVLGRAAAI VAKQLLLGKK    50
ITVVRCEKLT IAGSEIRNKI KYLQFLRKRK LSNPKLGPFH HRSPSDVFIR 100
TVRSMLPRYT KRGQRALRQL VAYEGVPVNV VRTGGRVVIP KAQRHNCYRN 150
ERRFTVLGNM CKHVGWKYSD VVEKLEAARI EKSGRHHKKM EKVRVAWKNA 200
RKEALKKMPQ KNVEVLKKFG LA 222
Length:222
Mass (Da):25,712
Last modified:May 10, 2005 - v1
Checksum:iBDB19526651E3C05
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC159443 Genomic DNA. Translation: AAX70428.1.
AC023489 Genomic DNA. Translation: AAX79210.1.
CP000067 Genomic DNA. Translation: AAZ10946.1.
CP000068 Genomic DNA. Translation: AAZ11276.1.
RefSeqiXP_844505.1. XM_839412.1.
XP_844835.1. XM_839742.1.

Genome annotation databases

EnsemblProtistsiAAZ10946; AAZ10946; Tb927.4.3550.
AAZ11276; AAZ11276; Tb927.5.1610.
GeneIDi3656883.
3657269.
KEGGitbr:Tb927.4.3550.
tbr:Tb927.5.1610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC159443 Genomic DNA. Translation: AAX70428.1 .
AC023489 Genomic DNA. Translation: AAX79210.1 .
CP000067 Genomic DNA. Translation: AAZ10946.1 .
CP000068 Genomic DNA. Translation: AAZ11276.1 .
RefSeqi XP_844505.1. XM_839412.1.
XP_844835.1. XM_839742.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3ZF7 electron microscopy 5.57 O 1-222 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblProtistsi AAZ10946 ; AAZ10946 ; Tb927.4.3550 .
AAZ11276 ; AAZ11276 ; Tb927.5.1610 .
GeneIDi 3656883.
3657269.
KEGGi tbr:Tb927.4.3550.
tbr:Tb927.5.1610.

Phylogenomic databases

eggNOGi COG0102.
HOGENOMi HOG000225289.
KOi K02872.
OMAi NCYRNER.

Family and domain databases

Gene3Di 3.90.1180.10. 1 hit.
InterProi IPR005822. Ribosomal_L13.
IPR023564. Ribosomal_L13_dom.
IPR005755. Ribosomal_L13_euk/arc.
[Graphical view ]
PANTHERi PTHR11545. PTHR11545. 1 hit.
PTHR11545:SF3. PTHR11545:SF3. 1 hit.
Pfami PF00572. Ribosomal_L13. 1 hit.
[Graphical view ]
SUPFAMi SSF52161. SSF52161. 1 hit.
TIGRFAMsi TIGR01077. L13_A_E. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. El-Sayed N.M., Khalak H., Adams M.D.
    Submitted (FEB-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 927/4 GUTat10.1Imported.
  4. "The genome of the African trypanosome Trypanosoma brucei."
    Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
    , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
    Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 927/4 GUTat10.1Imported.
  5. "Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
    Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G.
    , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 927/4 GUTat10.1Imported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  7. Haas B., Blandin G., El-Sayed N.
    Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: GUTat10.1Imported.
  8. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
    Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
    Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

Entry informationi

Entry nameiQ585J5_TRYB2
AccessioniPrimary (citable) accession number: Q585J5
Secondary accession number(s): D6XFU1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: September 3, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteome

External Data

Dasty 3

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