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Protein

Polyferredoxin protein VhuB

Gene

vhuB

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

[4Fe-4S] clusterCuratedNote: Binds 10 [4Fe-4S] clusters.Curated

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi13 – 131Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi16 – 161Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi19 – 191Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi23 – 231Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi36 – 361Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi39 – 391Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi42 – 421Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi46 – 461Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi73 – 731Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi76 – 761Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi79 – 791Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi83 – 831Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi101 – 1011Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi104 – 1041Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi107 – 1071Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi111 – 1111Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi142 – 1421Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi145 – 1451Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi148 – 1481Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi152 – 1521Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi171 – 1711Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi174 – 1741Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi177 – 1771Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi181 – 1811Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi210 – 2101Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi213 – 2131Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi216 – 2161Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi220 – 2201Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi240 – 2401Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi243 – 2431Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi246 – 2461Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi250 – 2501Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi306 – 3061Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi309 – 3091Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi312 – 3121Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi316 – 3161Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi343 – 3431Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi346 – 3461Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi349 – 3491Iron-sulfur (4Fe-4S)Sequence analysis
Metal bindingi353 – 3531Iron-sulfur (4Fe-4S)Sequence analysis

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Polyferredoxin protein VhuB
Gene namesi
Name:vhuB
Ordered Locus Names:MJ1193
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 394394Polyferredoxin protein VhuBPRO_0000159146Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1193.

Structurei

3D structure databases

ProteinModelPortaliQ58593.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 33304Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini26 – 56314Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST
Domaini64 – 93304Fe-4S ferredoxin-type 3PROSITE-ProRule annotationAdd
BLAST
Domaini92 – 121304Fe-4S ferredoxin-type 4PROSITE-ProRule annotationAdd
BLAST
Domaini133 – 162304Fe-4S ferredoxin-type 5PROSITE-ProRule annotationAdd
BLAST
Domaini162 – 191304Fe-4S ferredoxin-type 6PROSITE-ProRule annotationAdd
BLAST
Domaini201 – 230304Fe-4S ferredoxin-type 7PROSITE-ProRule annotationAdd
BLAST
Domaini231 – 260304Fe-4S ferredoxin-type 8PROSITE-ProRule annotationAdd
BLAST
Domaini292 – 326354Fe-4S ferredoxin-type 9PROSITE-ProRule annotationAdd
BLAST
Domaini334 – 363304Fe-4S ferredoxin-type 10PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 10 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiarCOG02181. Archaea.
COG1145. LUCA.
InParanoidiQ58593.
OMAiECIGCEK.
PhylomeDBiQ58593.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13237. Fer4_10. 1 hit.
PF12800. Fer4_4. 1 hit.
PF12838. Fer4_7. 3 hits.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 10 hits.
PS51379. 4FE4S_FER_2. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q58593-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLMSITIQK DACLVCYACQ AECPTKAIDI DSFKVCNLCM ECVKVCPTGA
60 70 80 90 100
LVEEEIEVNG KKLKRVNYLA HKCEKCGQCA EACPIGIKKV DDDFPYSKGH
110 120 130 140 150
CVLCQKCIDV CPIEIISLPG VIDKPKKEIK PPKEPIAVTD ACVGCGICVP
160 170 180 190 200
ECPVNAITLE NNKAVIDKSK CIYCSICAQT CPWNAIFVAG KIPKKRRKEV
210 220 230 240 250
KKFEVNAEKC IYCLKCVEVC PGDMIKVDEE NLIVIPPKSC PACKLCVNIC
260 270 280 290 300
PVDALDLEVK LSSPHPITDE GLVIVEEDFE VLKKCASVCP TEAIVVDEEK
310 320 330 340 350
KEVRMCIVCG ACTVACPTGA LKLGKIEHNG KEYNRIEFSP YLCDKCGKCV
360 370 380 390
EVCPMKTLRL SRGKLPLKGY CVMCLLCLSV AEKEKKGKKV LELR
Length:394
Mass (Da):43,343
Last modified:November 1, 1996 - v1
Checksum:i08C53D5F6C41D104
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99195.1.
PIRiH64448.

Genome annotation databases

EnsemblBacteriaiAAB99195; AAB99195; MJ_1193.
KEGGimja:MJ_1193.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99195.1.
PIRiH64448.

3D structure databases

ProteinModelPortaliQ58593.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_1193.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99195; AAB99195; MJ_1193.
KEGGimja:MJ_1193.

Phylogenomic databases

eggNOGiarCOG02181. Archaea.
COG1145. LUCA.
InParanoidiQ58593.
OMAiECIGCEK.
PhylomeDBiQ58593.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13237. Fer4_10. 1 hit.
PF12800. Fer4_4. 1 hit.
PF12838. Fer4_7. 3 hits.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 10 hits.
PS51379. 4FE4S_FER_2. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiVHUB_METJA
AccessioniPrimary (citable) accession number: Q58593
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.