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Protein

Polyferredoxin protein VhuB

Gene

vhuB

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

[4Fe-4S] clusterCuratedNote: Binds 10 [4Fe-4S] clusters.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi13Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi16Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi19Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi23Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi36Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi39Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi42Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi46Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi73Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi76Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi79Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi83Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi101Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi104Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi107Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi111Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi142Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi145Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi148Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi152Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi171Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi174Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi177Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi181Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi210Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi213Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi216Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi220Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi240Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi243Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi246Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi250Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi306Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi309Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi312Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi316Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi343Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi346Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi349Iron-sulfur (4Fe-4S)Sequence analysis1
Metal bindingi353Iron-sulfur (4Fe-4S)Sequence analysis1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Polyferredoxin protein VhuB
Gene namesi
Name:vhuB
Ordered Locus Names:MJ1193
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
Proteomesi
  • UP000000805 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001591461 – 394Polyferredoxin protein VhuBAdd BLAST394

Proteomic databases

PRIDEiQ58593.

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ_1193.

Structurei

3D structure databases

ProteinModelPortaliQ58593.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 334Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd BLAST30
Domaini26 – 564Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd BLAST31
Domaini64 – 934Fe-4S ferredoxin-type 3PROSITE-ProRule annotationAdd BLAST30
Domaini92 – 1214Fe-4S ferredoxin-type 4PROSITE-ProRule annotationAdd BLAST30
Domaini133 – 1624Fe-4S ferredoxin-type 5PROSITE-ProRule annotationAdd BLAST30
Domaini162 – 1914Fe-4S ferredoxin-type 6PROSITE-ProRule annotationAdd BLAST30
Domaini201 – 2304Fe-4S ferredoxin-type 7PROSITE-ProRule annotationAdd BLAST30
Domaini231 – 2604Fe-4S ferredoxin-type 8PROSITE-ProRule annotationAdd BLAST30
Domaini292 – 3264Fe-4S ferredoxin-type 9PROSITE-ProRule annotationAdd BLAST35
Domaini334 – 3634Fe-4S ferredoxin-type 10PROSITE-ProRule annotationAdd BLAST30

Sequence similaritiesi

Contains 10 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiarCOG02181. Archaea.
COG1145. LUCA.
InParanoidiQ58593.
OMAiECIGCEK.
PhylomeDBiQ58593.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13237. Fer4_10. 1 hit.
PF12800. Fer4_4. 1 hit.
PF12838. Fer4_7. 3 hits.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 10 hits.
PS51379. 4FE4S_FER_2. 10 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q58593-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLMSITIQK DACLVCYACQ AECPTKAIDI DSFKVCNLCM ECVKVCPTGA
60 70 80 90 100
LVEEEIEVNG KKLKRVNYLA HKCEKCGQCA EACPIGIKKV DDDFPYSKGH
110 120 130 140 150
CVLCQKCIDV CPIEIISLPG VIDKPKKEIK PPKEPIAVTD ACVGCGICVP
160 170 180 190 200
ECPVNAITLE NNKAVIDKSK CIYCSICAQT CPWNAIFVAG KIPKKRRKEV
210 220 230 240 250
KKFEVNAEKC IYCLKCVEVC PGDMIKVDEE NLIVIPPKSC PACKLCVNIC
260 270 280 290 300
PVDALDLEVK LSSPHPITDE GLVIVEEDFE VLKKCASVCP TEAIVVDEEK
310 320 330 340 350
KEVRMCIVCG ACTVACPTGA LKLGKIEHNG KEYNRIEFSP YLCDKCGKCV
360 370 380 390
EVCPMKTLRL SRGKLPLKGY CVMCLLCLSV AEKEKKGKKV LELR
Length:394
Mass (Da):43,343
Last modified:November 1, 1996 - v1
Checksum:i08C53D5F6C41D104
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99195.1.
PIRiH64448.

Genome annotation databases

EnsemblBacteriaiAAB99195; AAB99195; MJ_1193.
KEGGimja:MJ_1193.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L77117 Genomic DNA. Translation: AAB99195.1.
PIRiH64448.

3D structure databases

ProteinModelPortaliQ58593.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi243232.MJ_1193.

Proteomic databases

PRIDEiQ58593.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB99195; AAB99195; MJ_1193.
KEGGimja:MJ_1193.

Phylogenomic databases

eggNOGiarCOG02181. Archaea.
COG1145. LUCA.
InParanoidiQ58593.
OMAiECIGCEK.
PhylomeDBiQ58593.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13237. Fer4_10. 1 hit.
PF12800. Fer4_4. 1 hit.
PF12838. Fer4_7. 3 hits.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 10 hits.
PS51379. 4FE4S_FER_2. 10 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiVHUB_METJA
AccessioniPrimary (citable) accession number: Q58593
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.