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Q58584

- RISC_METJA

UniProt

Q58584 - RISC_METJA

Protein

Riboflavin synthase

Gene

ribC

Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine.

    Pathwayi

    GO - Molecular functioni

    1. riboflavin synthase activity Source: UniProtKB-EC

    GO - Biological processi

    1. riboflavin biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Transferase

    Keywords - Biological processi

    Riboflavin biosynthesis

    Enzyme and pathway databases

    BioCyciMetaCyc:MONOMER-14602.
    UniPathwayiUPA00275; UER00405.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Riboflavin synthase (EC:2.5.1.9)
    Gene namesi
    Name:ribC
    Ordered Locus Names:MJ1184
    OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
    Taxonomic identifieri243232 [NCBI]
    Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
    ProteomesiUP000000805: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. riboflavin synthase complex Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 156156Riboflavin synthasePRO_0000134860Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi243232.MJ1184.

    Structurei

    Secondary structure

    1
    156
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi4 – 129
    Helixi18 – 2811
    Beta strandi33 – 419
    Helixi42 – 443
    Helixi45 – 5511
    Beta strandi59 – 657
    Helixi71 – 9121
    Beta strandi95 – 995
    Helixi102 – 1043
    Beta strandi105 – 1073
    Helixi108 – 13124
    Helixi133 – 1386
    Turni139 – 1413

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2B98X-ray2.30A/B/C/D/E1-156[»]
    2B99X-ray2.22A/B/C/D/E1-156[»]
    ProteinModelPortaliQ58584.
    SMRiQ58584. Positions 2-153.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ58584.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the DMRL synthase family.Curated

    Phylogenomic databases

    eggNOGiCOG1731.
    KOiK00793.
    OMAiGIVDTTF.
    PhylomeDBiQ58584.

    Family and domain databases

    Gene3Di3.40.50.960. 1 hit.
    InterProiIPR002180. DMRL_synthase.
    IPR006399. Ribfl_synth_arc.
    [Graphical view]
    PfamiPF00885. DMRL_synthase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF015750. Ribfl_synth_arc. 1 hit.
    SUPFAMiSSF52121. SSF52121. 1 hit.
    TIGRFAMsiTIGR01506. ribC_arch. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q58584-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTKKVGIVDT TFARVDMASI AIKKLKELSP NIKIIRKTVP GIKDLPVACK    50
    KLLEEEGCDI VMALGMPGKA EKDKVCAHEA SLGLMLAQLM TNKHIIEVFV 100
    HEDEAKDDKE LDWLAKRRAE EHAENVYYLL FKPEYLTRMA GKGLRQGFED 150
    AGPARE 156
    Length:156
    Mass (Da):17,495
    Last modified:November 1, 1996 - v1
    Checksum:i6D65112C6B1320F5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L77117 Genomic DNA. Translation: AAB99185.1.
    PIRiG64447.
    RefSeqiNP_248178.1. NC_000909.1.
    WP_010870697.1. NC_000909.1.

    Genome annotation databases

    EnsemblBacteriaiAAB99185; AAB99185; MJ_1184.
    GeneIDi1452082.
    KEGGimja:MJ_1184.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L77117 Genomic DNA. Translation: AAB99185.1 .
    PIRi G64447.
    RefSeqi NP_248178.1. NC_000909.1.
    WP_010870697.1. NC_000909.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2B98 X-ray 2.30 A/B/C/D/E 1-156 [» ]
    2B99 X-ray 2.22 A/B/C/D/E 1-156 [» ]
    ProteinModelPortali Q58584.
    SMRi Q58584. Positions 2-153.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 243232.MJ1184.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB99185 ; AAB99185 ; MJ_1184 .
    GeneIDi 1452082.
    KEGGi mja:MJ_1184.

    Phylogenomic databases

    eggNOGi COG1731.
    KOi K00793.
    OMAi GIVDTTF.
    PhylomeDBi Q58584.

    Enzyme and pathway databases

    UniPathwayi UPA00275 ; UER00405 .
    BioCyci MetaCyc:MONOMER-14602.

    Miscellaneous databases

    EvolutionaryTracei Q58584.

    Family and domain databases

    Gene3Di 3.40.50.960. 1 hit.
    InterProi IPR002180. DMRL_synthase.
    IPR006399. Ribfl_synth_arc.
    [Graphical view ]
    Pfami PF00885. DMRL_synthase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF015750. Ribfl_synth_arc. 1 hit.
    SUPFAMi SSF52121. SSF52121. 1 hit.
    TIGRFAMsi TIGR01506. ribC_arch. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

    Entry informationi

    Entry nameiRISC_METJA
    AccessioniPrimary (citable) accession number: Q58584
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 2000
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Methanococcus jannaschii
      Methanococcus jannaschii: entries and gene names
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    4. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3