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Q58584

- RISC_METJA

UniProt

Q58584 - RISC_METJA

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Protein

Riboflavin synthase

Gene
ribC, MJ1184
Organism
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalytic activityi

2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine.

Pathwayi

GO - Molecular functioni

  1. riboflavin synthase activity Source: UniProtKB-EC

GO - Biological processi

  1. riboflavin biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

Riboflavin biosynthesis

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-14602.
UniPathwayiUPA00275; UER00405.

Names & Taxonomyi

Protein namesi
Recommended name:
Riboflavin synthase (EC:2.5.1.9)
Gene namesi
Name:ribC
Ordered Locus Names:MJ1184
OrganismiMethanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Taxonomic identifieri243232 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanocaldococcaceaeMethanocaldococcus
ProteomesiUP000000805: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. riboflavin synthase complex Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 156156Riboflavin synthasePRO_0000134860Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi243232.MJ1184.

Structurei

Secondary structure

1
156
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 129
Helixi18 – 2811
Beta strandi33 – 419
Helixi42 – 443
Helixi45 – 5511
Beta strandi59 – 657
Helixi71 – 9121
Beta strandi95 – 995
Helixi102 – 1043
Beta strandi105 – 1073
Helixi108 – 13124
Helixi133 – 1386
Turni139 – 1413

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2B98X-ray2.30A/B/C/D/E1-156[»]
2B99X-ray2.22A/B/C/D/E1-156[»]
ProteinModelPortaliQ58584.
SMRiQ58584. Positions 2-153.

Miscellaneous databases

EvolutionaryTraceiQ58584.

Family & Domainsi

Sequence similaritiesi

Belongs to the DMRL synthase family.

Phylogenomic databases

eggNOGiCOG1731.
KOiK00793.
OMAiGIVDTTF.
PhylomeDBiQ58584.

Family and domain databases

Gene3Di3.40.50.960. 1 hit.
InterProiIPR002180. DMRL_synthase.
IPR006399. Ribfl_synth_arc.
[Graphical view]
PfamiPF00885. DMRL_synthase. 1 hit.
[Graphical view]
PIRSFiPIRSF015750. Ribfl_synth_arc. 1 hit.
SUPFAMiSSF52121. SSF52121. 1 hit.
TIGRFAMsiTIGR01506. ribC_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

Q58584-1 [UniParc]FASTAAdd to Basket

« Hide

MTKKVGIVDT TFARVDMASI AIKKLKELSP NIKIIRKTVP GIKDLPVACK    50
KLLEEEGCDI VMALGMPGKA EKDKVCAHEA SLGLMLAQLM TNKHIIEVFV 100
HEDEAKDDKE LDWLAKRRAE EHAENVYYLL FKPEYLTRMA GKGLRQGFED 150
AGPARE 156
Length:156
Mass (Da):17,495
Last modified:November 1, 1996 - v1
Checksum:i6D65112C6B1320F5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB99185.1.
PIRiG64447.
RefSeqiNP_248178.1. NC_000909.1.
WP_010870697.1. NC_000909.1.

Genome annotation databases

EnsemblBacteriaiAAB99185; AAB99185; MJ_1184.
GeneIDi1452082.
KEGGimja:MJ_1184.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L77117 Genomic DNA. Translation: AAB99185.1 .
PIRi G64447.
RefSeqi NP_248178.1. NC_000909.1.
WP_010870697.1. NC_000909.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2B98 X-ray 2.30 A/B/C/D/E 1-156 [» ]
2B99 X-ray 2.22 A/B/C/D/E 1-156 [» ]
ProteinModelPortali Q58584.
SMRi Q58584. Positions 2-153.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 243232.MJ1184.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB99185 ; AAB99185 ; MJ_1184 .
GeneIDi 1452082.
KEGGi mja:MJ_1184.

Phylogenomic databases

eggNOGi COG1731.
KOi K00793.
OMAi GIVDTTF.
PhylomeDBi Q58584.

Enzyme and pathway databases

UniPathwayi UPA00275 ; UER00405 .
BioCyci MetaCyc:MONOMER-14602.

Miscellaneous databases

EvolutionaryTracei Q58584.

Family and domain databases

Gene3Di 3.40.50.960. 1 hit.
InterProi IPR002180. DMRL_synthase.
IPR006399. Ribfl_synth_arc.
[Graphical view ]
Pfami PF00885. DMRL_synthase. 1 hit.
[Graphical view ]
PIRSFi PIRSF015750. Ribfl_synth_arc. 1 hit.
SUPFAMi SSF52121. SSF52121. 1 hit.
TIGRFAMsi TIGR01506. ribC_arch. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

Entry informationi

Entry nameiRISC_METJA
AccessioniPrimary (citable) accession number: Q58584
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: November 1, 1996
Last modified: September 3, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Methanococcus jannaschii
    Methanococcus jannaschii: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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