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Q582N2

- Q582N2_TRYB2

UniProt

Q582N2 - Q582N2_TRYB2

Protein
Submitted name:

60S ribosomal protein L4

Gene

Tb927.3.5050

Organism
Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: GeneDB_Tbrucei

    GO - Biological processi

    1. translation Source: GeneDB_Tbrucei

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    60S ribosomal protein L4Imported
    Gene namesi
    ORF Names:Tb927.3.5050Imported
    OrganismiTrypanosoma brucei brucei (strain 927/4 GUTat10.1)Imported
    Taxonomic identifieri999953 [NCBI]
    Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeTrypanosoma
    ProteomesiUP000008524: Chromosome 3

    Subcellular locationi

    GO - Cellular componenti

    1. intracellular Source: GeneDB_Tbrucei
    2. ribosome Source: GeneDB_Tbrucei

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3ZF7electron microscopy5.57r1-374[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0088.
    HOGENOMiHOG000107331.
    KOiK02930.
    OMAiTRIMQSE.

    Family and domain databases

    Gene3Di3.40.1370.10. 1 hit.
    InterProiIPR025755. Ribos_L4_C_dom.
    IPR002136. Ribosomal_L4/L1e.
    IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view]
    PfamiPF14374. Ribos_L4_asso_C. 1 hit.
    PF00573. Ribosomal_L4. 1 hit.
    [Graphical view]
    SUPFAMiSSF52166. SSF52166. 1 hit.
    PROSITEiPS00939. RIBOSOMAL_L1E. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q582N2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTARPSVSVY SASEDKVVGT CSLPAVFTAP IRHDVVQFVH TNMAKNSRQP    50
    YAVNRLSGMK HSAESWGTGR AVARIPRIHG GGTSMSGAGA FGNMCRGGRM 100
    FAPTKIFRRW HRKINLHQKR FAVVSALAAS SLPALVMSRG HKIENVAEVP 150
    LVVEDGVRAY EKTKEAMTFL KTVGAIDDVN RVNDSRQIRA GRGKMRNRRY 200
    VARRGPMLVM PDNKGTRAFR NIFGLDLANV NSLNLLHLAP GGHVGRFIIW 250
    TKSAFEKLDK IFGTFTEPST VKSGFMLPAP MLTSTDVTRI MQSEEVRRVL 300
    KPKKLQPKRP SRYRQPTNGI RNRRLRLRLN PFQKKEKAMA KGMQNKKNRE 350
    ARHAAKVVRL AKARKNVAKA LKKK 374
    Length:374
    Mass (Da):41,856
    Last modified:May 10, 2005 - v1
    Checksum:i82405438786F917B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC091483 Genomic DNA. Translation: AAX80672.1.
    CP000066 Genomic DNA. Translation: AAZ10536.1.
    RefSeqiXP_844095.1. XM_839002.1.

    Genome annotation databases

    EnsemblProtistsiAAZ10536; AAZ10536; Tb927.3.5050.
    GeneIDi3656445.
    KEGGitbr:Tb927.3.5050.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC091483 Genomic DNA. Translation: AAX80672.1 .
    CP000066 Genomic DNA. Translation: AAZ10536.1 .
    RefSeqi XP_844095.1. XM_839002.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3ZF7 electron microscopy 5.57 r 1-374 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi AAZ10536 ; AAZ10536 ; Tb927.3.5050 .
    GeneIDi 3656445.
    KEGGi tbr:Tb927.3.5050.

    Phylogenomic databases

    eggNOGi COG0088.
    HOGENOMi HOG000107331.
    KOi K02930.
    OMAi TRIMQSE.

    Family and domain databases

    Gene3Di 3.40.1370.10. 1 hit.
    InterProi IPR025755. Ribos_L4_C_dom.
    IPR002136. Ribosomal_L4/L1e.
    IPR013000. Ribosomal_L4/L1e_euk/arc_CS.
    IPR023574. Ribosomal_L4_dom.
    [Graphical view ]
    Pfami PF14374. Ribos_L4_asso_C. 1 hit.
    PF00573. Ribosomal_L4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52166. SSF52166. 1 hit.
    PROSITEi PS00939. RIBOSOMAL_L1E. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. El-Sayed N.M., Khalak H., Adams M.D.
      Submitted (APR-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    4. "The genome of the African trypanosome Trypanosoma brucei."
      Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B., Bohme U., Hannick L., Aslett M.A., Shallom J., Marcello L., Hou L., Wickstead B., Alsmark U.C.M.
      , Arrowsmith C., Atkin R.J., Barron A.J., Bringaud F., Brooks K., Carrington M., Cherevach I., Chillingworth T.J., Churcher C., Clark L.N., Corton C.H., Cronin A., Davies R.M., Doggett J., Djikeng A., Feldblyum T., Field M.C., Fraser A., Goodhead I., Hance Z., Harper D., Harris B.R., Hauser H., Hostetler J., Ivens A., Jagels K., Johnson D., Johnson J., Jones K., Kerhornou A.X., Koo H., Larke N., Landfear S., Larkin C., Leech V., Line A., Lord A., Macleod A., Mooney P.J., Moule S., Martin D.M., Morgan G.W., Mungall K., Norbertczak H., Ormond D., Pai G., Peacock C.S., Peterson J., Quail M.A., Rabbinowitsch E., Rajandream M.A., Reitter C., Salzberg S.L., Sanders M., Schobel S., Sharp S., Simmonds M., Simpson A.J., Tallon L., Turner C.M., Tait A., Tivey A.R., Van Aken S., Walker D., Wanless D., Wang S., White B., White O., Whitehead S., Woodward J., Wortman J., Adams M.D., Embley T.M., Gull K., Ullu E., Barry J.D., Fairlamb A.H., Opperdoes F., Barrell B.G., Donelson J.E., Hall N., Fraser C.M., Melville S.E., El-Sayed N.M.A.
      Science 309:416-422(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 927/4 GUTat10.1Imported.
    5. "Sequencing, closure, and annotation of Trypanosoma brucei chromosomes 2 through 8."
      Ghedin E., Blandin G., Bartholomeu D., Caler E., Haas B., Hannick L., Shallom J., Hou L., Djikeng A., Feldblyum T., Hostetler J., Johnson J., Jones K., Koo H.L., Larkin C., Pai G., Peterson J., Khalak H.G.
      , Salzberg S., Simpson A.J., Tallon L., Van Aken S., Wanless D., White O., Wortman J., Fraser C.M., El-Sayed N.M.A.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 927/4 GUTat10.1Imported.
    6. Haas B., Blandin G., El-Sayed N.
      Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: GUTat10.1Imported.
    7. "High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome."
      Hashem Y., des Georges A., Fu J., Buss S.N., Jossinet F., Jobe A., Zhang Q., Liao H.Y., Grassucci R.A., Bajaj C., Westhof E., Madison-Antenucci S., Frank J.
      Nature 494:385-389(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (5.57 ANGSTROMS).

    Entry informationi

    Entry nameiQ582N2_TRYB2
    AccessioniPrimary (citable) accession number: Q582N2
    Secondary accession number(s): D6XE59
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 10, 2005
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3